Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0196 and PP_0197 overlap by 1 nucleotides PP_0197 and PP_0198 are separated by 99 nucleotides PP_0198 and PP_0199 are separated by 48 nucleotides PP_0199 and PP_0200 are separated by 8 nucleotides
PP_0196: PP_0196 - putative of ABC superfamily informational factor: ATP-binding components, at 245,823 to 247,733
_0196
PP_0197: PP_0197 - conserved protein of unknown function, at 247,733 to 248,320
_0197
PP_0198: PP_0198 - putative transporter, at 248,420 to 249,052
_0198
PP_0199: PP_0199 - putative membrane protease family, stomatin, at 249,101 to 249,847
_0199
PP_0200: PP_0200 - putative membrane bound peptidase, nefD, at 249,856 to 251,202
_0200
Position (kb) 248
249
250 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 247.587 kb on + strand at 247.835 kb on - strand, within PP_0197 at 248.165 kb on - strand, within PP_0197 at 248.233 kb on + strand, within PP_0197 at 248.233 kb on + strand, within PP_0197 at 248.233 kb on + strand, within PP_0197 at 248.233 kb on + strand, within PP_0197 at 248.234 kb on - strand, within PP_0197 at 248.234 kb on - strand, within PP_0197 at 248.281 kb on - strand at 248.380 kb on - strand at 248.433 kb on + strand at 248.433 kb on + strand at 248.433 kb on + strand at 248.433 kb on + strand at 248.433 kb on + strand at 248.434 kb on - strand at 248.434 kb on - strand at 248.434 kb on - strand at 248.434 kb on - strand at 248.672 kb on + strand, within PP_0198 at 248.681 kb on + strand, within PP_0198 at 248.681 kb on + strand, within PP_0198 at 248.682 kb on - strand, within PP_0198 at 248.864 kb on + strand, within PP_0198 at 248.864 kb on + strand, within PP_0198 at 248.865 kb on - strand, within PP_0198 at 248.865 kb on - strand, within PP_0198 at 248.919 kb on - strand, within PP_0198 at 249.062 kb on + strand at 249.063 kb on - strand at 249.102 kb on + strand at 249.102 kb on + strand at 249.103 kb on - strand at 249.137 kb on + strand at 249.199 kb on + strand, within PP_0199 at 249.199 kb on + strand at 249.199 kb on + strand, within PP_0199 at 249.200 kb on - strand, within PP_0199 at 249.200 kb on - strand, within PP_0199 at 249.200 kb on - strand, within PP_0199 at 249.201 kb on + strand, within PP_0199 at 249.201 kb on + strand at 249.202 kb on - strand, within PP_0199 at 249.202 kb on - strand, within PP_0199 at 249.202 kb on - strand, within PP_0199 at 249.425 kb on + strand, within PP_0199 at 249.425 kb on + strand, within PP_0199 at 249.425 kb on + strand, within PP_0199 at 249.647 kb on + strand, within PP_0199 at 249.664 kb on + strand, within PP_0199 at 249.664 kb on + strand, within PP_0199 at 249.664 kb on + strand at 249.664 kb on + strand, within PP_0199 at 249.665 kb on - strand, within PP_0199 at 249.665 kb on - strand, within PP_0199 at 249.665 kb on - strand, within PP_0199 at 249.680 kb on + strand, within PP_0199 at 249.681 kb on - strand, within PP_0199 at 249.772 kb on - strand, within PP_0199 at 249.925 kb on + strand at 249.925 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days remove 247,587 + -3.0 247,835 - PP_0197 0.17 +3.6 248,165 - PP_0197 0.73 +5.2 248,233 + PP_0197 0.85 -0.3 248,233 + PP_0197 0.85 -0.4 248,233 + PP_0197 0.85 -1.0 248,233 + PP_0197 0.85 +1.1 248,234 - PP_0197 0.85 +0.3 248,234 - PP_0197 0.85 +0.4 248,281 - -0.3 248,380 - -0.1 248,433 + +0.1 248,433 + -0.7 248,433 + -0.1 248,433 + -2.2 248,433 + +0.1 248,434 - -0.1 248,434 - +1.6 248,434 - +0.3 248,434 - +0.8 248,672 + PP_0198 0.40 -0.8 248,681 + PP_0198 0.41 +0.5 248,681 + PP_0198 0.41 +0.2 248,682 - PP_0198 0.41 +0.6 248,864 + PP_0198 0.70 +0.6 248,864 + PP_0198 0.70 +1.5 248,865 - PP_0198 0.70 +0.1 248,865 - PP_0198 0.70 -0.1 248,919 - PP_0198 0.79 +0.3 249,062 + +1.1 249,063 - +1.0 249,102 + +0.4 249,102 + -0.2 249,103 - +0.5 249,137 + +1.7 249,199 + PP_0199 0.13 -0.2 249,199 + +1.5 249,199 + PP_0199 0.13 -0.1 249,200 - PP_0199 0.13 -0.9 249,200 - PP_0199 0.13 -1.8 249,200 - PP_0199 0.13 -0.3 249,201 + PP_0199 0.13 -1.0 249,201 + +2.0 249,202 - PP_0199 0.14 +0.7 249,202 - PP_0199 0.14 +0.9 249,202 - PP_0199 0.14 +0.2 249,425 + PP_0199 0.43 -0.6 249,425 + PP_0199 0.43 -0.8 249,425 + PP_0199 0.43 +0.6 249,647 + PP_0199 0.73 +1.2 249,664 + PP_0199 0.75 -0.2 249,664 + PP_0199 0.75 -0.8 249,664 + +1.0 249,664 + PP_0199 0.75 +1.5 249,665 - PP_0199 0.76 +0.8 249,665 - PP_0199 0.76 +0.4 249,665 - PP_0199 0.76 -1.3 249,680 + PP_0199 0.78 -1.5 249,681 - PP_0199 0.78 -0.3 249,772 - PP_0199 0.90 -0.5 249,925 + -0.4 249,925 + -0.3
Or see this region's nucleotide sequence