Strain Fitness in Pseudomonas putida KT2440 around PP_3439

Experiment: Apigenin 100 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Apigenin 100 ug/ml
3,895,010	+				+0.1
3,895,059	+				-0.1
3,895,067	-				+0.3
3,895,147	+				+0.0
3,895,148	-				+0.3
3,895,148	-				-0.3
3,895,149	+				+0.1
3,895,149	+				-0.3
3,895,150	-				+0.2
3,895,150	-				+0.1
3,895,159	+				-0.0
3,895,178	+				+0.3
3,895,178	+				+0.2
3,895,179	-				+0.5
3,895,182	-				-0.1
3,895,203	-				+0.1
3,895,203	-				+0.4
3,895,216	+				-0.2
3,895,217	-				-0.2
3,895,217	-				-0.7
3,895,230	+				+0.4
3,895,251	-				-0.2
3,895,280	-				+0.2
3,895,293	-				+0.2
3,895,293	-				+0.1
3,895,319	+				+0.3
3,895,357	+				+0.1
3,895,357	+				+0.1
3,895,357	+				-0.0
3,895,358	-				+0.5
3,895,358	-				+0.0
3,895,358	-				-0.2
3,895,358	-				+0.2
3,895,358	-				+0.2
3,895,359	+				-0.6
3,895,359	+				+0.4
3,895,360	-				-0.2
3,895,360	-				-0.2
3,895,360	-				+0.3
3,895,534	+		PP_3438	0.32	-0.3
3,895,534	+		PP_3438	0.32	-0.2
3,895,534	+		PP_3438	0.32	+0.1
3,895,534	+		PP_3438	0.32	+0.3
3,895,534	+		PP_3438	0.32	+0.3
3,895,535	-		PP_3438	0.32	-0.1
3,895,540	+		PP_3438	0.33	-0.2
3,895,583	-		PP_3438	0.40	+0.1
3,895,596	+		PP_3438	0.42	+0.2
3,895,737	+		PP_3438	0.66	-0.2
3,895,773	-		PP_3438	0.73	+0.0
3,895,782	+		PP_3438	0.74	-0.3
3,895,897	+				+0.1
3,895,981	+		PP_3439	0.10	-0.1
3,895,982	-		PP_3439	0.10	+0.5
3,896,122	-		PP_3439	0.27	-0.0
3,896,122	-		PP_3439	0.27	-0.1
3,896,301	-		PP_3439	0.48	-0.0
3,896,407	+		PP_3439	0.60	+0.2
3,896,408	-		PP_3439	0.60	-0.4
3,896,408	-		PP_3439	0.60	+0.3
3,896,408	-		PP_3439	0.60	+0.4
3,896,494	+		PP_3439	0.70	-0.4
3,896,494	+		PP_3439	0.70	+0.2
3,896,494	+				+1.4
3,896,495	-		PP_3439	0.71	-0.1
3,896,599	+		PP_3439	0.83	-0.4
3,896,599	+		PP_3439	0.83	+0.3
3,896,600	-		PP_3439	0.83	+0.1
3,896,606	+		PP_3439	0.84	-0.3
3,896,606	+		PP_3439	0.84	+0.4
3,896,606	+		PP_3439	0.84	+0.3
3,896,607	-		PP_3439	0.84	+0.2
3,896,607	-		PP_3439	0.84	+0.1
3,896,659	+		PP_3439	0.90	-0.3
3,896,660	-				-0.2
3,896,682	+				+0.1
3,896,749	+				+0.5
3,896,750	-				-0.3
3,896,782	+				-0.1
3,896,785	+				+0.5
3,896,785	+				-0.1
3,896,785	+				+0.1
3,896,786	-				-0.2
3,896,867	+				-0.2
3,896,868	-				-0.1
3,896,868	-				+0.2
3,896,908	-		PP_3440	0.10	+0.0
3,896,908	-		PP_3440	0.10	-0.2
3,896,913	+		PP_3440	0.11	+0.1
3,896,913	+		PP_3440	0.11	+0.2
3,896,916	+		PP_3440	0.11	+0.1
3,896,917	-				+2.1
3,897,022	+		PP_3440	0.21	-0.3
3,897,333	+		PP_3440	0.48	-0.1
3,897,334	-		PP_3440	0.48	+0.0
3,897,414	+		PP_3440	0.56	+0.0
3,897,414	+		PP_3440	0.56	-0.3
3,897,415	-		PP_3440	0.56	+0.8
3,897,415	-		PP_3440	0.56	+0.1
3,897,415	-		PP_3440	0.56	-0.2
3,897,465	-		PP_3440	0.60	-0.1
3,897,474	+		PP_3440	0.61	+0.6
3,897,524	-		PP_3440	0.65	+0.1
3,897,524	-		PP_3440	0.65	-0.3
3,897,564	+		PP_3440	0.69	-0.1
3,897,564	+		PP_3440	0.69	+0.1
3,897,564	+		PP_3440	0.69	-0.4
3,897,564	+		PP_3440	0.69	-0.2
3,897,587	+		PP_3440	0.71	-0.8
3,897,587	+		PP_3440	0.71	+0.0
3,897,587	+		PP_3440	0.71	-0.6
3,897,587	+		PP_3440	0.71	-0.3
3,897,587	+		PP_3440	0.71	-0.1
3,897,587	+		PP_3440	0.71	+0.4
3,897,588	-		PP_3440	0.71	+0.3
3,897,588	-		PP_3440	0.71	-0.0
3,897,588	-		PP_3440	0.71	-0.3
3,897,588	-		PP_3440	0.71	+0.2
3,897,604	-		PP_3440	0.73	-0.2
3,897,635	-		PP_3440	0.75	+0.2