Strain Fitness in Pseudomonas putida KT2440 around PP_2910

Experiment: Apigenin 100 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Apigenin 100 ug/ml
3,307,968	+		PP_2909	0.18	+0.1
3,307,969	-		PP_2909	0.18	+0.2
3,308,172	+		PP_2909	0.39	+0.2
3,308,173	-		PP_2909	0.39	+0.4
3,308,196	+		PP_2909	0.41	-0.0
3,308,197	-		PP_2909	0.41	-0.3
3,308,197	-		PP_2909	0.41	-0.3
3,308,197	-		PP_2909	0.41	+0.2
3,308,520	+		PP_2909	0.74	+0.1
3,308,521	-		PP_2909	0.74	-0.0
3,308,521	-		PP_2909	0.74	+0.3
3,308,521	-		PP_2909	0.74	-0.4
3,308,550	+		PP_2909	0.77	-0.2
3,308,630	-		PP_2909	0.85	+0.1
3,308,630	-		PP_2909	0.85	-0.1
3,308,630	-		PP_2909	0.85	+0.3
3,308,754	+				-0.3
3,308,754	+				-0.4
3,308,755	-				+0.5
3,308,769	+				+0.6
3,308,879	+				+0.1
3,308,880	-				-0.6
3,308,880	-				+0.0
3,308,955	+				-0.1
3,309,048	+		PP_2910	0.13	+0.3
3,309,049	-		PP_2910	0.13	+0.1
3,309,049	-		PP_2910	0.13	-0.2
3,309,049	-		PP_2910	0.13	-0.2
3,309,049	-		PP_2910	0.13	+0.4
3,309,049	-		PP_2910	0.13	+0.0
3,309,051	+		PP_2910	0.13	-0.3
3,309,051	+		PP_2910	0.13	-0.3
3,309,051	+		PP_2910	0.13	+0.0
3,309,052	-		PP_2910	0.13	-0.0
3,309,052	-		PP_2910	0.13	-0.4
3,309,234	+		PP_2910	0.28	-0.1
3,309,234	+		PP_2910	0.28	+0.3
3,309,235	-		PP_2910	0.28	+0.1
3,309,235	-		PP_2910	0.28	+0.2
3,309,324	+		PP_2910	0.35	+0.1
3,309,558	+		PP_2910	0.54	-0.1
3,309,559	-		PP_2910	0.54	+0.0
3,309,559	-		PP_2910	0.54	+0.0
3,309,559	-		PP_2910	0.54	+0.0
3,309,561	+		PP_2910	0.54	-0.1
3,309,867	+		PP_2910	0.78	-0.2
3,309,868	-		PP_2910	0.78	-0.4
3,309,882	-		PP_2910	0.80	-0.1
3,310,019	+				+0.1
3,310,044	+				-0.0
3,310,044	+				-0.6
3,310,044	+				+0.2
3,310,280	+				-0.2
3,310,280	+				+0.0
3,310,280	+				-0.2
3,310,432	-		PP_2911	0.10	+0.2
3,310,432	-		PP_2911	0.10	-0.1
3,310,434	-		PP_2911	0.11	+0.5
3,310,522	-		PP_2911	0.17	-0.4
3,310,554	+		PP_2911	0.19	+0.3
3,310,623	-		PP_2911	0.24	-0.4
3,310,663	-		PP_2911	0.27	+0.8
3,310,980	-		PP_2911	0.50	+0.1
3,310,980	-		PP_2911	0.50	-0.2
3,311,025	+		PP_2911	0.53	-1.0
3,311,025	+		PP_2911	0.53	-0.3
3,311,060	-				-0.1
3,311,097	+		PP_2911	0.58	-0.6
3,311,097	+		PP_2911	0.58	-0.6
3,311,097	+		PP_2911	0.58	+0.1
3,311,098	-		PP_2911	0.58	+0.3