Strain Fitness in Pseudomonas putida KT2440 around PP_1080

Experiment: Apigenin 100 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Apigenin 100 ug/ml
1,238,469	+		PP_1079	0.40	-0.1
1,238,469	+		PP_1079	0.40	+0.3
1,238,470	-		PP_1079	0.40	+0.0
1,238,470	-		PP_1079	0.40	-0.7
1,238,526	+		PP_1079	0.46	-0.2
1,238,526	+		PP_1079	0.46	-0.2
1,238,526	+		PP_1079	0.46	-0.4
1,238,527	-		PP_1079	0.46	-0.1
1,238,527	-		PP_1079	0.46	+0.2
1,238,527	-		PP_1079	0.46	+0.7
1,238,527	-		PP_1079	0.46	+0.2
1,238,527	-		PP_1079	0.46	+0.2
1,239,033	+				+0.2
1,239,038	+				+0.4
1,239,038	+				-0.5
1,239,039	-				-0.1
1,239,039	-				+0.4
1,239,039	-				+0.3
1,239,039	-				+0.0
1,239,125	-				-0.1
1,239,139	+				-0.0
1,239,140	-				+0.3
1,239,140	-				-0.1
1,239,140	-				+0.4
1,239,140	-				+0.2
1,239,140	-				-0.1
1,239,142	+				-0.6
1,239,144	+				+0.1
1,239,144	+				-0.1
1,239,145	-				-0.1
1,239,145	-				-0.0
1,239,149	-				+0.0
1,239,216	-				-0.2
1,239,239	+				+0.3
1,239,239	+				+0.2
1,239,246	+				-0.2
1,239,247	-				-0.0
1,239,258	+				+0.1
1,239,259	-				+0.3
1,239,259	-				+0.2
1,239,259	-				-0.1
1,239,259	-				+0.0
1,239,364	+				-0.4
1,239,365	-				+0.0
1,239,365	-				-0.0
1,239,636	+		PP_1080	0.11	-0.1
1,239,636	+		PP_1080	0.11	-0.7
1,239,636	+		PP_1080	0.11	+0.1
1,239,721	+		PP_1080	0.15	-0.3
1,239,721	+		PP_1080	0.15	-0.2
1,239,721	+		PP_1080	0.15	-0.4
1,239,722	-		PP_1080	0.15	+0.3
1,239,722	-		PP_1080	0.15	-0.2
1,239,772	+		PP_1080	0.18	+1.6
1,239,779	+		PP_1080	0.18	+0.0
1,239,780	-		PP_1080	0.18	+0.2
1,239,859	+		PP_1080	0.22	+0.2
1,239,859	+		PP_1080	0.22	-0.3
1,239,859	+		PP_1080	0.22	+0.5
1,239,859	+		PP_1080	0.22	-0.0
1,239,860	-		PP_1080	0.22	-0.2
1,239,860	-		PP_1080	0.22	+0.3
1,239,860	-		PP_1080	0.22	+0.3
1,239,860	-		PP_1080	0.22	-0.5
1,239,860	-		PP_1080	0.22	+0.0
1,240,035	+		PP_1080	0.30	-0.6
1,240,073	+		PP_1080	0.32	+0.0
1,240,074	-		PP_1080	0.32	-0.4
1,240,074	-		PP_1080	0.32	+0.0
1,240,230	+		PP_1080	0.39	+0.2
1,240,294	+		PP_1080	0.42	-0.0
1,240,489	+		PP_1080	0.52	-0.2
1,240,660	+		PP_1080	0.60	-0.1
1,240,660	+		PP_1080	0.60	+0.2
1,240,729	+		PP_1080	0.63	-0.0
1,240,730	-		PP_1080	0.63	+0.1
1,240,730	-		PP_1080	0.63	+0.0
1,240,930	+		PP_1080	0.73	+0.2
1,240,931	-		PP_1080	0.73	+0.0
1,241,286	+		PP_1080	0.89	-0.4
1,241,287	-		PP_1080	0.89	+0.1
1,241,359	+				-0.5
1,241,547	-				+0.1
1,241,597	+				-0.9
1,241,597	+				-0.9
1,241,597	+				-0.0
1,241,605	+				-0.0
1,241,654	+		PP_1081	0.16	+0.3
1,241,990	+				-0.0
1,241,990	+				-0.1
1,241,991	-				-0.3
1,241,994	+				-0.5
1,241,994	+				-0.1
1,241,995	-				+0.0
1,242,021	+				-0.3
1,242,101	-		PP_1082	0.23	-0.1
1,242,103	-		PP_1082	0.23	-0.1
1,242,265	+		PP_1082	0.57	+0.2
1,242,266	-		PP_1082	0.58	-0.4
1,242,266	-		PP_1082	0.58	+0.1
1,242,283	+		PP_1082	0.61	-0.2
1,242,373	-		PP_1082	0.80	-0.2
1,242,373	-				-0.1
1,242,452	+				-0.4
1,242,453	-				+1.9
1,242,453	-				+0.4
1,242,453	-				+0.3
1,242,485	-				-0.0