Strain Fitness in Pseudomonas putida KT2440 around PP_3665

Experiment: Apigenin 50 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3664 and PP_3665 are separated by 181 nucleotidesPP_3665 and PP_3666 are separated by 116 nucleotides PP_3664: PP_3664 - CDP-diacylglycerol--serine O-phosphatidyltransferase, at 4,162,133 to 4,163,461 _3664 PP_3665: PP_3665 - AraC family transcriptional regulator, at 4,163,643 to 4,164,650 _3665 PP_3666: PP_3666 - Metabolite MFS transporter, MHS family, at 4,164,767 to 4,166,101 _3666 Position (kb) 4163 4164 4165Strain fitness (log2 ratio) -1 0 1at 4162.672 kb on - strand, within PP_3664at 4162.678 kb on + strand, within PP_3664at 4162.678 kb on + strand, within PP_3664at 4162.678 kb on + strand, within PP_3664at 4162.810 kb on - strand, within PP_3664at 4162.868 kb on - strand, within PP_3664at 4162.906 kb on + strand, within PP_3664at 4162.974 kb on + strand, within PP_3664at 4163.010 kb on + strand, within PP_3664at 4163.011 kb on - strand, within PP_3664at 4163.037 kb on + strand, within PP_3664at 4163.038 kb on - strandat 4163.157 kb on + strand, within PP_3664at 4163.268 kb on + strand, within PP_3664at 4163.269 kb on - strand, within PP_3664at 4163.313 kb on + strand, within PP_3664at 4163.314 kb on - strand, within PP_3664at 4163.314 kb on - strand, within PP_3664at 4163.376 kb on + strandat 4163.540 kb on + strandat 4163.540 kb on + strandat 4163.541 kb on - strandat 4163.541 kb on - strandat 4163.564 kb on + strandat 4163.679 kb on - strandat 4163.679 kb on - strandat 4163.679 kb on - strandat 4163.802 kb on + strand, within PP_3665at 4163.803 kb on - strand, within PP_3665at 4163.803 kb on - strand, within PP_3665at 4163.874 kb on + strand, within PP_3665at 4163.874 kb on + strandat 4163.875 kb on - strand, within PP_3665at 4163.945 kb on + strand, within PP_3665at 4164.009 kb on - strand, within PP_3665at 4164.020 kb on + strand, within PP_3665at 4164.024 kb on + strand, within PP_3665at 4164.024 kb on + strand, within PP_3665at 4164.025 kb on - strand, within PP_3665at 4164.156 kb on + strand, within PP_3665at 4164.157 kb on - strand, within PP_3665at 4164.450 kb on + strand, within PP_3665at 4164.451 kb on - strand, within PP_3665at 4164.451 kb on - strand, within PP_3665at 4164.451 kb on - strand, within PP_3665at 4164.474 kb on + strand, within PP_3665at 4164.477 kb on + strand, within PP_3665at 4164.477 kb on + strand, within PP_3665at 4164.478 kb on - strand, within PP_3665at 4164.478 kb on - strand, within PP_3665at 4164.512 kb on - strand, within PP_3665at 4164.512 kb on - strand, within PP_3665at 4164.544 kb on + strand, within PP_3665at 4164.544 kb on + strand, within PP_3665at 4164.591 kb on + strandat 4164.591 kb on + strandat 4164.591 kb on + strandat 4164.591 kb on + strandat 4164.591 kb on + strandat 4164.591 kb on + strandat 4164.592 kb on - strandat 4164.593 kb on + strandat 4164.594 kb on - strandat 4164.594 kb on - strandat 4164.701 kb on + strandat 4164.701 kb on + strandat 4164.735 kb on + strandat 4164.736 kb on - strandat 4164.768 kb on + strandat 4164.846 kb on + strandat 4164.846 kb on - strandat 4164.847 kb on - strandat 4165.192 kb on + strand, within PP_3666at 4165.192 kb on + strand, within PP_3666at 4165.194 kb on + strand, within PP_3666at 4165.194 kb on + strand, within PP_3666at 4165.194 kb on + strand, within PP_3666at 4165.194 kb on + strand, within PP_3666at 4165.194 kb on + strand, within PP_3666at 4165.195 kb on - strand, within PP_3666at 4165.195 kb on - strand, within PP_3666at 4165.195 kb on - strand, within PP_3666at 4165.195 kb on - strand, within PP_3666at 4165.195 kb on - strand, within PP_3666at 4165.195 kb on - strand, within PP_3666at 4165.195 kb on - strand, within PP_3666at 4165.263 kb on + strand, within PP_3666at 4165.264 kb on - strand, within PP_3666at 4165.264 kb on - strand, within PP_3666at 4165.275 kb on + strand, within PP_3666at 4165.275 kb on + strand, within PP_3666at 4165.276 kb on - strand, within PP_3666at 4165.276 kb on - strand, within PP_3666at 4165.290 kb on + strand, within PP_3666at 4165.291 kb on - strand, within PP_3666at 4165.291 kb on - strand, within PP_3666at 4165.454 kb on - strand, within PP_3666at 4165.455 kb on + strand, within PP_3666at 4165.455 kb on + strand, within PP_3666at 4165.455 kb on + strand, within PP_3666at 4165.455 kb on + strand, within PP_3666at 4165.455 kb on + strand, within PP_3666at 4165.455 kb on + strand, within PP_3666at 4165.456 kb on - strand, within PP_3666at 4165.611 kb on + strand, within PP_3666at 4165.611 kb on + strand, within PP_3666at 4165.611 kb on + strand, within PP_3666at 4165.612 kb on - strand, within PP_3666at 4165.612 kb on - strand, within PP_3666

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Per-strain Table

Position Strand Gene LocusTag Fraction Apigenin 50 ug/ml
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4,162,672 - PP_3664 0.41 -0.3
4,162,678 + PP_3664 0.41 +0.1
4,162,678 + PP_3664 0.41 +0.0
4,162,678 + PP_3664 0.41 -0.2
4,162,810 - PP_3664 0.51 +0.1
4,162,868 - PP_3664 0.55 -1.1
4,162,906 + PP_3664 0.58 -0.8
4,162,974 + PP_3664 0.63 -0.4
4,163,010 + PP_3664 0.66 -0.1
4,163,011 - PP_3664 0.66 -0.2
4,163,037 + PP_3664 0.68 -0.6
4,163,038 - +0.2
4,163,157 + PP_3664 0.77 -0.4
4,163,268 + PP_3664 0.85 +0.1
4,163,269 - PP_3664 0.85 +0.1
4,163,313 + PP_3664 0.89 -0.1
4,163,314 - PP_3664 0.89 -0.1
4,163,314 - PP_3664 0.89 +0.0
4,163,376 + +0.1
4,163,540 + -0.6
4,163,540 + +0.1
4,163,541 - +0.3
4,163,541 - -0.1
4,163,564 + +0.5
4,163,679 - +0.1
4,163,679 - -0.0
4,163,679 - -0.5
4,163,802 + PP_3665 0.16 +0.5
4,163,803 - PP_3665 0.16 -0.1
4,163,803 - PP_3665 0.16 +0.4
4,163,874 + PP_3665 0.23 +0.1
4,163,874 + +0.6
4,163,875 - PP_3665 0.23 -0.6
4,163,945 + PP_3665 0.30 -0.6
4,164,009 - PP_3665 0.36 +0.0
4,164,020 + PP_3665 0.37 +0.4
4,164,024 + PP_3665 0.38 -0.3
4,164,024 + PP_3665 0.38 +0.3
4,164,025 - PP_3665 0.38 +0.3
4,164,156 + PP_3665 0.51 -0.1
4,164,157 - PP_3665 0.51 +0.3
4,164,450 + PP_3665 0.80 +0.1
4,164,451 - PP_3665 0.80 -0.3
4,164,451 - PP_3665 0.80 +0.4
4,164,451 - PP_3665 0.80 -0.3
4,164,474 + PP_3665 0.82 +0.2
4,164,477 + PP_3665 0.83 -0.3
4,164,477 + PP_3665 0.83 +0.4
4,164,478 - PP_3665 0.83 -0.0
4,164,478 - PP_3665 0.83 -0.3
4,164,512 - PP_3665 0.86 -0.8
4,164,512 - PP_3665 0.86 +0.1
4,164,544 + PP_3665 0.89 +0.1
4,164,544 + PP_3665 0.89 +0.5
4,164,591 + +0.6
4,164,591 + +0.1
4,164,591 + +0.2
4,164,591 + +0.2
4,164,591 + +0.4
4,164,591 + -0.6
4,164,592 - -0.8
4,164,593 + +0.0
4,164,594 - -0.0
4,164,594 - -1.0
4,164,701 + -0.2
4,164,701 + +0.1
4,164,735 + -0.3
4,164,736 - +0.0
4,164,768 + +0.4
4,164,846 + -0.1
4,164,846 - +0.1
4,164,847 - -0.5
4,165,192 + PP_3666 0.32 +0.5
4,165,192 + PP_3666 0.32 +0.2
4,165,194 + PP_3666 0.32 +0.3
4,165,194 + PP_3666 0.32 -0.4
4,165,194 + PP_3666 0.32 -0.0
4,165,194 + PP_3666 0.32 +0.0
4,165,194 + PP_3666 0.32 -0.1
4,165,195 - PP_3666 0.32 +0.5
4,165,195 - PP_3666 0.32 -0.1
4,165,195 - PP_3666 0.32 +0.3
4,165,195 - PP_3666 0.32 +0.2
4,165,195 - PP_3666 0.32 -0.6
4,165,195 - PP_3666 0.32 +0.2
4,165,195 - PP_3666 0.32 +0.2
4,165,263 + PP_3666 0.37 -0.5
4,165,264 - PP_3666 0.37 -0.3
4,165,264 - PP_3666 0.37 +0.2
4,165,275 + PP_3666 0.38 +0.1
4,165,275 + PP_3666 0.38 -0.1
4,165,276 - PP_3666 0.38 +0.1
4,165,276 - PP_3666 0.38 -0.5
4,165,290 + PP_3666 0.39 -0.1
4,165,291 - PP_3666 0.39 -0.1
4,165,291 - PP_3666 0.39 -0.5
4,165,454 - PP_3666 0.51 +0.1
4,165,455 + PP_3666 0.52 +0.0
4,165,455 + PP_3666 0.52 -0.6
4,165,455 + PP_3666 0.52 -0.3
4,165,455 + PP_3666 0.52 +0.0
4,165,455 + PP_3666 0.52 +0.4
4,165,455 + PP_3666 0.52 -0.1
4,165,456 - PP_3666 0.52 +0.1
4,165,611 + PP_3666 0.63 -0.1
4,165,611 + PP_3666 0.63 -0.6
4,165,611 + PP_3666 0.63 +0.3
4,165,612 - PP_3666 0.63 +0.4
4,165,612 - PP_3666 0.63 -0.3

Or see this region's nucleotide sequence