Strain Fitness in Pseudomonas putida KT2440 around PP_2945

Experiment: Apigenin 50 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Apigenin 50 ug/ml
3,348,507	+		PP_2944	0.45	-0.2
3,348,694	+				-0.3
3,348,694	+		PP_2944	0.55	-0.1
3,348,896	+		PP_2944	0.66	-0.3
3,349,013	+		PP_2944	0.73	+0.2
3,349,013	+		PP_2944	0.73	-0.2
3,349,014	-				+0.9
3,349,205	+		PP_2944	0.83	-0.8
3,349,205	+		PP_2944	0.83	-0.3
3,349,205	+		PP_2944	0.83	-0.5
3,349,206	-		PP_2944	0.83	-1.1
3,349,465	+				-0.2
3,349,555	-				-1.1
3,349,685	-		PP_2945	0.13	+0.0
3,349,741	+		PP_2945	0.17	-0.2
3,349,852	+		PP_2945	0.25	-0.2
3,349,861	+		PP_2945	0.25	-0.4
3,350,222	-		PP_2945	0.51	-0.8
3,350,238	-		PP_2945	0.52	-0.7
3,350,254	+		PP_2945	0.53	-0.2
3,350,255	-		PP_2945	0.53	-0.3
3,350,255	-		PP_2945	0.53	-0.6
3,350,401	-		PP_2945	0.64	-0.4
3,350,490	+		PP_2945	0.70	-1.0
3,350,491	-		PP_2945	0.70	-1.4
3,350,591	+		PP_2945	0.77	-0.5
3,350,592	-		PP_2945	0.77	-1.7
3,350,698	-		PP_2945	0.85	-0.6
3,350,801	-				-1.1
3,350,810	+				-0.3
3,350,810	+				-2.6
3,350,831	+				-1.1
3,350,832	-				-0.1
3,350,837	+				+0.0
3,350,837	+				+0.2
3,350,837	+				-0.3
3,350,873	+				-0.6
3,350,874	-				-0.6
3,350,874	-				+0.1
3,350,923	-				-0.3
3,351,073	+				-0.1
3,351,073	+				-0.0
3,351,119	+		PP_2946	0.13	-0.2
3,351,174	+		PP_2946	0.26	+0.2
3,351,180	+		PP_2946	0.28	+0.2
3,351,181	-		PP_2946	0.28	+0.2
3,351,181	-		PP_2946	0.28	+0.4
3,351,181	-		PP_2946	0.28	-0.1
3,351,181	-		PP_2946	0.28	+0.3
3,351,181	-		PP_2946	0.28	+0.1
3,351,219	-		PP_2946	0.37	+0.1
3,351,476	+				-0.3
3,351,476	+				-0.0
3,351,476	+				-0.1
3,351,476	+				-0.0
3,351,476	+				-0.2
3,351,477	-				-0.5
3,351,477	-				-0.8
3,351,552	+				+0.1
3,351,553	-				-0.2
3,351,553	-				-0.0
3,351,596	-				+0.1
3,351,604	-				+0.0
3,351,629	+				-0.3
3,351,630	-				+0.1
3,351,630	-				-0.2
3,351,630	-				+0.0
3,351,630	-				-0.1
3,351,704	-				-0.3
3,351,713	+				-0.4
3,351,875	+		PP_2947	0.37	+0.1
3,351,884	-		PP_2947	0.39	+0.2