Strain Fitness in Pseudomonas putida KT2440 around PP_0746

Experiment: Apigenin 50 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0745 and PP_0746 are separated by 2 nucleotidesPP_0746 and PP_0747 are separated by 162 nucleotidesPP_0747 and PP_0748 are separated by 2 nucleotides PP_0745: PP_0745 - putative uracil permease, at 863,919 to 865,184 _0745 PP_0746: PP_0746 - Uracil phosphoribosyltransferase, at 865,187 to 865,825 _0746 PP_0747: PP_0747 - Hypoxanthine-guanine phosphoribosyltransferase, at 865,988 to 866,545 _0747 PP_0748: PP_0748 - conserved protein of unknown function, at 866,548 to 867,021 _0748 Position (kb) 865 866Strain fitness (log2 ratio) -3 -2 -1 0 1at 864.248 kb on + strand, within PP_0745at 864.248 kb on + strand, within PP_0745at 864.249 kb on - strand, within PP_0745at 864.289 kb on + strand, within PP_0745at 864.290 kb on - strand, within PP_0745at 864.290 kb on - strand, within PP_0745at 864.290 kb on - strand, within PP_0745at 864.328 kb on + strand, within PP_0745at 864.328 kb on + strandat 864.328 kb on + strand, within PP_0745at 864.329 kb on - strand, within PP_0745at 864.368 kb on + strand, within PP_0745at 864.422 kb on - strand, within PP_0745at 864.422 kb on - strand, within PP_0745at 864.728 kb on - strand, within PP_0745at 864.895 kb on + strand, within PP_0745at 864.895 kb on + strand, within PP_0745at 864.895 kb on + strand, within PP_0745at 864.895 kb on + strand, within PP_0745at 864.896 kb on - strand, within PP_0745at 864.896 kb on - strand, within PP_0745at 864.896 kb on - strand, within PP_0745at 865.005 kb on + strand, within PP_0745at 865.006 kb on - strand, within PP_0745at 865.032 kb on + strand, within PP_0745at 865.033 kb on - strand, within PP_0745at 865.033 kb on - strand, within PP_0745at 865.252 kb on - strand, within PP_0746at 865.252 kb on - strand, within PP_0746at 865.488 kb on + strand, within PP_0746at 865.488 kb on + strand, within PP_0746at 865.488 kb on + strand, within PP_0746at 865.488 kb on + strand, within PP_0746at 865.489 kb on - strand, within PP_0746at 865.489 kb on - strand, within PP_0746at 865.489 kb on - strand, within PP_0746at 865.489 kb on - strand, within PP_0746at 865.605 kb on - strand, within PP_0746at 865.605 kb on - strand, within PP_0746at 865.607 kb on + strand, within PP_0746at 865.607 kb on + strand, within PP_0746at 865.608 kb on - strand, within PP_0746at 865.672 kb on - strand, within PP_0746at 865.672 kb on - strand, within PP_0746at 865.704 kb on + strand, within PP_0746at 865.705 kb on - strand, within PP_0746at 865.705 kb on - strand, within PP_0746at 865.705 kb on - strand, within PP_0746at 865.864 kb on - strandat 865.868 kb on + strandat 865.869 kb on - strandat 865.869 kb on - strandat 865.869 kb on - strandat 865.871 kb on + strandat 865.873 kb on + strandat 865.874 kb on - strandat 865.874 kb on - strandat 865.874 kb on - strandat 865.910 kb on + strandat 865.910 kb on + strandat 865.911 kb on - strandat 865.917 kb on + strandat 865.918 kb on - strandat 865.918 kb on - strandat 865.948 kb on - strandat 865.948 kb on - strandat 866.008 kb on + strandat 866.008 kb on + strandat 866.008 kb on + strandat 866.009 kb on - strandat 866.042 kb on + strandat 866.042 kb on + strandat 866.201 kb on + strand, within PP_0747at 866.308 kb on + strand, within PP_0747at 866.378 kb on + strand, within PP_0747at 866.378 kb on + strand, within PP_0747at 866.441 kb on + strand, within PP_0747at 866.441 kb on + strand, within PP_0747at 866.441 kb on + strand, within PP_0747at 866.441 kb on + strand, within PP_0747at 866.441 kb on + strand, within PP_0747at 866.441 kb on + strand, within PP_0747at 866.441 kb on + strand, within PP_0747at 866.441 kb on + strand, within PP_0747at 866.441 kb on + strand, within PP_0747at 866.442 kb on - strand, within PP_0747at 866.442 kb on - strand, within PP_0747at 866.442 kb on - strand, within PP_0747at 866.442 kb on - strand, within PP_0747at 866.442 kb on - strand, within PP_0747at 866.442 kb on - strand, within PP_0747at 866.442 kb on - strand, within PP_0747at 866.442 kb on - strand, within PP_0747at 866.442 kb on - strand, within PP_0747at 866.468 kb on + strand, within PP_0747at 866.468 kb on + strand, within PP_0747at 866.469 kb on - strand, within PP_0747at 866.469 kb on - strand, within PP_0747at 866.469 kb on - strand, within PP_0747at 866.469 kb on - strand, within PP_0747at 866.469 kb on - strand, within PP_0747at 866.470 kb on + strand, within PP_0747at 866.470 kb on + strand, within PP_0747at 866.471 kb on - strand, within PP_0747at 866.471 kb on - strand, within PP_0747at 866.481 kb on - strand, within PP_0747at 866.492 kb on + strandat 866.492 kb on + strandat 866.492 kb on + strandat 866.492 kb on + strandat 866.493 kb on - strandat 866.502 kb on - strandat 866.647 kb on - strand, within PP_0748at 866.695 kb on + strand, within PP_0748at 866.696 kb on - strand, within PP_0748at 866.696 kb on - strand, within PP_0748

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Per-strain Table

Position Strand Gene LocusTag Fraction Apigenin 50 ug/ml
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864,248 + PP_0745 0.26 -0.4
864,248 + PP_0745 0.26 -0.6
864,249 - PP_0745 0.26 +0.7
864,289 + PP_0745 0.29 -0.3
864,290 - PP_0745 0.29 -0.5
864,290 - PP_0745 0.29 +0.2
864,290 - PP_0745 0.29 -0.1
864,328 + PP_0745 0.32 +0.0
864,328 + -1.7
864,328 + PP_0745 0.32 +0.0
864,329 - PP_0745 0.32 +0.2
864,368 + PP_0745 0.35 -0.2
864,422 - PP_0745 0.40 +0.2
864,422 - PP_0745 0.40 -0.2
864,728 - PP_0745 0.64 -0.0
864,895 + PP_0745 0.77 -0.2
864,895 + PP_0745 0.77 -0.5
864,895 + PP_0745 0.77 +0.3
864,895 + PP_0745 0.77 +0.3
864,896 - PP_0745 0.77 +0.0
864,896 - PP_0745 0.77 +0.5
864,896 - PP_0745 0.77 -0.0
865,005 + PP_0745 0.86 -0.0
865,006 - PP_0745 0.86 +0.3
865,032 + PP_0745 0.88 +0.2
865,033 - PP_0745 0.88 +0.2
865,033 - PP_0745 0.88 -0.2
865,252 - PP_0746 0.10 +0.0
865,252 - PP_0746 0.10 -0.4
865,488 + PP_0746 0.47 +0.0
865,488 + PP_0746 0.47 -1.4
865,488 + PP_0746 0.47 +0.1
865,488 + PP_0746 0.47 -0.1
865,489 - PP_0746 0.47 +0.0
865,489 - PP_0746 0.47 -0.1
865,489 - PP_0746 0.47 +0.4
865,489 - PP_0746 0.47 -0.6
865,605 - PP_0746 0.65 +0.3
865,605 - PP_0746 0.65 -0.2
865,607 + PP_0746 0.66 -0.8
865,607 + PP_0746 0.66 -0.7
865,608 - PP_0746 0.66 +0.3
865,672 - PP_0746 0.76 +0.1
865,672 - PP_0746 0.76 +0.2
865,704 + PP_0746 0.81 +0.2
865,705 - PP_0746 0.81 +0.3
865,705 - PP_0746 0.81 +0.1
865,705 - PP_0746 0.81 -0.1
865,864 - -0.1
865,868 + +0.2
865,869 - +0.0
865,869 - -1.9
865,869 - +0.2
865,871 + +0.3
865,873 + -0.2
865,874 - -0.4
865,874 - +0.3
865,874 - +0.4
865,910 + -0.3
865,910 + -1.7
865,911 - +0.1
865,917 + +0.1
865,918 - +0.0
865,918 - -0.1
865,948 - -0.4
865,948 - +0.5
866,008 + +0.3
866,008 + -0.5
866,008 + +0.3
866,009 - -1.1
866,042 + -0.3
866,042 + +0.3
866,201 + PP_0747 0.38 +0.0
866,308 + PP_0747 0.57 +0.0
866,378 + PP_0747 0.70 +0.2
866,378 + PP_0747 0.70 +0.1
866,441 + PP_0747 0.81 -0.4
866,441 + PP_0747 0.81 +0.4
866,441 + PP_0747 0.81 +0.3
866,441 + PP_0747 0.81 -0.0
866,441 + PP_0747 0.81 -0.3
866,441 + PP_0747 0.81 -0.3
866,441 + PP_0747 0.81 -0.3
866,441 + PP_0747 0.81 +0.0
866,441 + PP_0747 0.81 -0.6
866,442 - PP_0747 0.81 -1.0
866,442 - PP_0747 0.81 -0.7
866,442 - PP_0747 0.81 -0.6
866,442 - PP_0747 0.81 -0.3
866,442 - PP_0747 0.81 +0.1
866,442 - PP_0747 0.81 -0.5
866,442 - PP_0747 0.81 -0.7
866,442 - PP_0747 0.81 -0.2
866,442 - PP_0747 0.81 +0.2
866,468 + PP_0747 0.86 -0.3
866,468 + PP_0747 0.86 +0.8
866,469 - PP_0747 0.86 -0.3
866,469 - PP_0747 0.86 -3.0
866,469 - PP_0747 0.86 +0.0
866,469 - PP_0747 0.86 +0.4
866,469 - PP_0747 0.86 -0.8
866,470 + PP_0747 0.86 +0.0
866,470 + PP_0747 0.86 -0.2
866,471 - PP_0747 0.87 +0.2
866,471 - PP_0747 0.87 +0.3
866,481 - PP_0747 0.88 -0.3
866,492 + -0.2
866,492 + +0.5
866,492 + +0.1
866,492 + -0.4
866,493 - -0.6
866,502 - +0.0
866,647 - PP_0748 0.21 -0.1
866,695 + PP_0748 0.31 -0.0
866,696 - PP_0748 0.31 +0.1
866,696 - PP_0748 0.31 +0.2

Or see this region's nucleotide sequence