Strain Fitness in Pseudomonas putida KT2440 around PP_0324

Experiment: Dimethyl Sulfoxide 1 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0323 and PP_0324 are separated by 14 nucleotidesPP_0324 and PP_0325 overlap by 4 nucleotides PP_0323: PP_0323 - sarcosine oxidase subunit beta, at 388,130 to 389,380 _0323 PP_0324: PP_0324 - sarcosine oxidase subunit delta, at 389,395 to 389,730 _0324 PP_0325: PP_0325 - sarcosine oxidase subunit alpha, at 389,727 to 392,741 _0325 Position (kb) 389 390Strain fitness (log2 ratio) -1 0 1at 388.406 kb on + strand, within PP_0323at 388.406 kb on + strand, within PP_0323at 388.407 kb on - strand, within PP_0323at 388.454 kb on + strand, within PP_0323at 388.454 kb on + strand, within PP_0323at 388.455 kb on - strand, within PP_0323at 388.455 kb on - strand, within PP_0323at 388.455 kb on - strand, within PP_0323at 388.455 kb on - strand, within PP_0323at 388.484 kb on + strand, within PP_0323at 388.484 kb on + strand, within PP_0323at 388.484 kb on + strand, within PP_0323at 388.485 kb on - strand, within PP_0323at 388.485 kb on - strand, within PP_0323at 388.605 kb on - strand, within PP_0323at 388.654 kb on - strand, within PP_0323at 388.976 kb on + strand, within PP_0323at 388.976 kb on + strand, within PP_0323at 389.148 kb on + strand, within PP_0323at 389.148 kb on + strand, within PP_0323at 389.149 kb on - strand, within PP_0323at 389.149 kb on - strand, within PP_0323at 389.330 kb on + strandat 389.330 kb on + strandat 389.330 kb on + strandat 389.330 kb on + strandat 389.403 kb on + strandat 389.404 kb on - strandat 389.404 kb on - strandat 389.404 kb on - strandat 389.404 kb on - strandat 389.517 kb on + strand, within PP_0324at 389.521 kb on + strand, within PP_0324at 389.521 kb on + strand, within PP_0324at 389.521 kb on + strand, within PP_0324at 389.521 kb on + strand, within PP_0324at 389.521 kb on + strand, within PP_0324at 389.521 kb on + strand, within PP_0324at 389.521 kb on + strand, within PP_0324at 389.521 kb on + strand, within PP_0324at 389.521 kb on + strand, within PP_0324at 389.521 kb on + strand, within PP_0324at 389.521 kb on + strand, within PP_0324at 389.522 kb on - strand, within PP_0324at 389.522 kb on - strand, within PP_0324at 389.522 kb on - strand, within PP_0324at 389.522 kb on - strand, within PP_0324at 389.522 kb on - strand, within PP_0324at 389.522 kb on - strand, within PP_0324at 389.522 kb on - strand, within PP_0324at 389.522 kb on - strand, within PP_0324at 389.522 kb on - strand, within PP_0324at 389.530 kb on + strand, within PP_0324at 389.530 kb on + strand, within PP_0324at 389.530 kb on + strand, within PP_0324at 389.530 kb on + strand, within PP_0324at 389.530 kb on + strand, within PP_0324at 389.593 kb on + strand, within PP_0324at 389.594 kb on - strand, within PP_0324at 389.641 kb on + strand, within PP_0324at 389.642 kb on - strand, within PP_0324at 389.727 kb on - strandat 389.740 kb on - strandat 389.740 kb on - strandat 389.763 kb on - strandat 389.808 kb on + strandat 389.808 kb on + strandat 389.809 kb on - strandat 389.876 kb on + strandat 389.876 kb on + strandat 389.876 kb on + strandat 389.877 kb on - strandat 389.886 kb on + strandat 389.887 kb on - strandat 389.887 kb on - strandat 389.964 kb on - strandat 390.003 kb on + strandat 390.004 kb on - strandat 390.108 kb on + strand, within PP_0325at 390.108 kb on + strand, within PP_0325at 390.111 kb on + strand, within PP_0325at 390.126 kb on + strand, within PP_0325at 390.127 kb on - strand, within PP_0325at 390.151 kb on - strand, within PP_0325at 390.151 kb on - strand, within PP_0325at 390.159 kb on + strand, within PP_0325at 390.160 kb on - strand, within PP_0325at 390.160 kb on - strand, within PP_0325at 390.167 kb on + strand, within PP_0325at 390.167 kb on + strand, within PP_0325at 390.168 kb on - strand, within PP_0325at 390.216 kb on + strand, within PP_0325at 390.216 kb on + strand, within PP_0325at 390.216 kb on + strand, within PP_0325at 390.217 kb on - strand, within PP_0325at 390.217 kb on - strand, within PP_0325at 390.222 kb on + strand, within PP_0325at 390.222 kb on + strand, within PP_0325at 390.222 kb on + strand, within PP_0325at 390.222 kb on + strand, within PP_0325at 390.222 kb on + strand, within PP_0325at 390.223 kb on - strand, within PP_0325at 390.482 kb on + strand, within PP_0325at 390.483 kb on - strand, within PP_0325at 390.586 kb on + strand, within PP_0325at 390.622 kb on - strand, within PP_0325at 390.665 kb on - strand, within PP_0325at 390.672 kb on + strand, within PP_0325at 390.672 kb on + strand, within PP_0325at 390.672 kb on + strand, within PP_0325at 390.672 kb on + strand, within PP_0325at 390.672 kb on + strand, within PP_0325at 390.672 kb on + strand, within PP_0325at 390.672 kb on + strand, within PP_0325at 390.672 kb on + strand, within PP_0325at 390.672 kb on + strand, within PP_0325at 390.672 kb on + strand, within PP_0325at 390.673 kb on - strand, within PP_0325at 390.712 kb on + strand, within PP_0325at 390.713 kb on - strand, within PP_0325

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 1 vol%
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388,406 + PP_0323 0.22 +0.1
388,406 + PP_0323 0.22 +0.3
388,407 - PP_0323 0.22 +0.0
388,454 + PP_0323 0.26 +0.0
388,454 + PP_0323 0.26 -0.1
388,455 - PP_0323 0.26 +0.1
388,455 - PP_0323 0.26 +0.1
388,455 - PP_0323 0.26 +0.1
388,455 - PP_0323 0.26 -0.2
388,484 + PP_0323 0.28 -0.7
388,484 + PP_0323 0.28 +0.4
388,484 + PP_0323 0.28 -0.4
388,485 - PP_0323 0.28 +0.7
388,485 - PP_0323 0.28 -1.3
388,605 - PP_0323 0.38 -0.2
388,654 - PP_0323 0.42 -1.7
388,976 + PP_0323 0.68 -0.9
388,976 + PP_0323 0.68 +0.2
389,148 + PP_0323 0.81 +0.2
389,148 + PP_0323 0.81 +0.3
389,149 - PP_0323 0.81 +0.3
389,149 - PP_0323 0.81 -0.0
389,330 + +0.2
389,330 + +0.3
389,330 + -0.8
389,330 + +0.1
389,403 + -1.2
389,404 - +0.3
389,404 - -0.6
389,404 - -0.6
389,404 - -0.3
389,517 + PP_0324 0.36 -0.9
389,521 + PP_0324 0.38 +0.7
389,521 + PP_0324 0.38 -0.7
389,521 + PP_0324 0.38 +0.9
389,521 + PP_0324 0.38 -0.6
389,521 + PP_0324 0.38 +0.4
389,521 + PP_0324 0.38 -0.8
389,521 + PP_0324 0.38 +0.2
389,521 + PP_0324 0.38 +0.1
389,521 + PP_0324 0.38 +0.1
389,521 + PP_0324 0.38 +0.1
389,521 + PP_0324 0.38 +0.1
389,522 - PP_0324 0.38 -0.5
389,522 - PP_0324 0.38 -0.3
389,522 - PP_0324 0.38 -0.7
389,522 - PP_0324 0.38 +0.5
389,522 - PP_0324 0.38 -0.2
389,522 - PP_0324 0.38 -0.2
389,522 - PP_0324 0.38 +0.7
389,522 - PP_0324 0.38 +0.3
389,522 - PP_0324 0.38 -0.2
389,530 + PP_0324 0.40 +0.6
389,530 + PP_0324 0.40 +0.1
389,530 + PP_0324 0.40 +0.6
389,530 + PP_0324 0.40 -0.4
389,530 + PP_0324 0.40 -0.3
389,593 + PP_0324 0.59 -0.6
389,594 - PP_0324 0.59 -0.1
389,641 + PP_0324 0.73 +0.3
389,642 - PP_0324 0.74 -0.0
389,727 - -0.1
389,740 - -0.8
389,740 - -0.1
389,763 - +0.1
389,808 + +0.1
389,808 + -0.4
389,809 - +0.3
389,876 + +0.2
389,876 + +0.0
389,876 + -0.1
389,877 - +0.1
389,886 + -0.1
389,887 - -0.2
389,887 - -1.3
389,964 - -0.1
390,003 + -0.3
390,004 - -0.1
390,108 + PP_0325 0.13 +0.1
390,108 + PP_0325 0.13 -0.4
390,111 + PP_0325 0.13 -0.1
390,126 + PP_0325 0.13 +0.3
390,127 - PP_0325 0.13 -1.0
390,151 - PP_0325 0.14 -0.3
390,151 - PP_0325 0.14 +0.3
390,159 + PP_0325 0.14 -0.6
390,160 - PP_0325 0.14 +1.1
390,160 - PP_0325 0.14 +0.8
390,167 + PP_0325 0.15 +0.6
390,167 + PP_0325 0.15 -0.5
390,168 - PP_0325 0.15 -0.4
390,216 + PP_0325 0.16 +0.5
390,216 + PP_0325 0.16 -0.3
390,216 + PP_0325 0.16 +0.3
390,217 - PP_0325 0.16 -0.1
390,217 - PP_0325 0.16 +0.2
390,222 + PP_0325 0.16 -0.2
390,222 + PP_0325 0.16 +0.2
390,222 + PP_0325 0.16 +0.7
390,222 + PP_0325 0.16 +0.2
390,222 + PP_0325 0.16 -0.3
390,223 - PP_0325 0.16 -0.3
390,482 + PP_0325 0.25 -0.2
390,483 - PP_0325 0.25 -0.4
390,586 + PP_0325 0.28 +0.1
390,622 - PP_0325 0.30 +0.2
390,665 - PP_0325 0.31 +0.4
390,672 + PP_0325 0.31 -0.1
390,672 + PP_0325 0.31 -1.1
390,672 + PP_0325 0.31 -0.4
390,672 + PP_0325 0.31 +0.4
390,672 + PP_0325 0.31 -0.6
390,672 + PP_0325 0.31 -1.4
390,672 + PP_0325 0.31 +0.0
390,672 + PP_0325 0.31 +0.3
390,672 + PP_0325 0.31 -0.2
390,672 + PP_0325 0.31 +0.5
390,673 - PP_0325 0.31 +0.3
390,712 + PP_0325 0.33 -1.0
390,713 - PP_0325 0.33 -0.2

Or see this region's nucleotide sequence