Strain Fitness in Pseudomonas putida KT2440 around PP_1621

Experiment: LB 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1619 and PP_1620 overlap by 13 nucleotidesPP_1620 and PP_1621 overlap by 22 nucleotidesPP_1621 and PP_1622 are separated by 306 nucleotides PP_1619: PP_1619 - tRNA pseudouridine synthase D, at 1,815,083 to 1,816,141 _1619 PP_1620: PP_1620 - 5'(3')-nucleotidase and polyphosphatase, at 1,816,129 to 1,816,878 _1620 PP_1621: PP_1621 - Protein-L-isoaspartate O-methyltransferase, at 1,816,857 to 1,817,552 _1621 PP_1622: PP_1622 - metallopeptidase, M23B subfamily, at 1,817,859 to 1,818,647 _1622 Position (kb) 1816 1817 1818Strain fitness (log2 ratio) -1 0 1at 1816.017 kb on - strandat 1816.017 kb on - strand, within PP_1619at 1816.017 kb on - strand, within PP_1619at 1816.030 kb on + strand, within PP_1619at 1816.134 kb on + strandat 1816.134 kb on + strandat 1816.205 kb on - strand, within PP_1620at 1816.432 kb on + strand, within PP_1620at 1816.432 kb on + strand, within PP_1620at 1816.432 kb on + strand, within PP_1620at 1816.479 kb on + strand, within PP_1620at 1816.537 kb on + strand, within PP_1620at 1816.537 kb on + strand, within PP_1620at 1816.537 kb on + strand, within PP_1620at 1816.538 kb on - strand, within PP_1620at 1816.538 kb on - strand, within PP_1620at 1816.596 kb on - strand, within PP_1620at 1816.596 kb on - strand, within PP_1620at 1816.608 kb on + strand, within PP_1620at 1816.792 kb on + strand, within PP_1620at 1816.792 kb on + strand, within PP_1620at 1816.792 kb on + strand, within PP_1620at 1816.793 kb on - strand, within PP_1620at 1816.793 kb on - strand, within PP_1620at 1816.793 kb on - strand, within PP_1620at 1816.796 kb on + strand, within PP_1620at 1816.796 kb on + strand, within PP_1620at 1816.797 kb on - strand, within PP_1620at 1816.892 kb on + strandat 1816.892 kb on + strandat 1816.892 kb on + strandat 1816.929 kb on + strand, within PP_1621at 1817.049 kb on + strand, within PP_1621at 1817.049 kb on + strand, within PP_1621at 1817.182 kb on - strand, within PP_1621at 1817.227 kb on + strand, within PP_1621at 1817.234 kb on + strand, within PP_1621at 1817.234 kb on + strand, within PP_1621at 1817.235 kb on - strand, within PP_1621at 1817.243 kb on - strand, within PP_1621at 1817.243 kb on - strand, within PP_1621at 1817.280 kb on - strand, within PP_1621at 1817.434 kb on + strand, within PP_1621at 1817.593 kb on - strandat 1817.679 kb on + strandat 1817.680 kb on - strandat 1817.680 kb on - strandat 1817.727 kb on - strandat 1817.739 kb on - strandat 1817.739 kb on - strandat 1818.256 kb on + strandat 1818.307 kb on + strand, within PP_1622at 1818.308 kb on - strand, within PP_1622

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 30C
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1,816,017 - -0.3
1,816,017 - PP_1619 0.88 +0.0
1,816,017 - PP_1619 0.88 -0.3
1,816,030 + PP_1619 0.89 +0.2
1,816,134 + +0.2
1,816,134 + +0.0
1,816,205 - PP_1620 0.10 +0.5
1,816,432 + PP_1620 0.40 -0.5
1,816,432 + PP_1620 0.40 +0.4
1,816,432 + PP_1620 0.40 -0.1
1,816,479 + PP_1620 0.47 -0.1
1,816,537 + PP_1620 0.54 +0.2
1,816,537 + PP_1620 0.54 -0.2
1,816,537 + PP_1620 0.54 +0.4
1,816,538 - PP_1620 0.55 -1.3
1,816,538 - PP_1620 0.55 -0.2
1,816,596 - PP_1620 0.62 -0.3
1,816,596 - PP_1620 0.62 -0.1
1,816,608 + PP_1620 0.64 +0.3
1,816,792 + PP_1620 0.88 +0.0
1,816,792 + PP_1620 0.88 +0.6
1,816,792 + PP_1620 0.88 +0.2
1,816,793 - PP_1620 0.89 -0.4
1,816,793 - PP_1620 0.89 -0.1
1,816,793 - PP_1620 0.89 -0.3
1,816,796 + PP_1620 0.89 -0.8
1,816,796 + PP_1620 0.89 -0.3
1,816,797 - PP_1620 0.89 -0.4
1,816,892 + -0.2
1,816,892 + +0.4
1,816,892 + +0.2
1,816,929 + PP_1621 0.10 -0.1
1,817,049 + PP_1621 0.28 -0.1
1,817,049 + PP_1621 0.28 -0.4
1,817,182 - PP_1621 0.47 -0.8
1,817,227 + PP_1621 0.53 -1.1
1,817,234 + PP_1621 0.54 -0.3
1,817,234 + PP_1621 0.54 +0.3
1,817,235 - PP_1621 0.54 +0.2
1,817,243 - PP_1621 0.55 -0.3
1,817,243 - PP_1621 0.55 +0.2
1,817,280 - PP_1621 0.61 -0.4
1,817,434 + PP_1621 0.83 +0.5
1,817,593 - +0.2
1,817,679 + -0.4
1,817,680 - -0.2
1,817,680 - -0.3
1,817,727 - -0.7
1,817,739 - +0.1
1,817,739 - -0.3
1,818,256 + +1.0
1,818,307 + PP_1622 0.57 -0.1
1,818,308 - PP_1622 0.57 -1.5

Or see this region's nucleotide sequence