Strain Fitness in Pseudomonas putida KT2440 around PP_3683

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days
4,185,727	-				-0.2
4,185,780	+				-0.4
4,185,780	+				+0.1
4,185,781	-				+0.1
4,185,795	-				+0.0
4,185,795	-				+0.3
4,185,795	-				+3.6
4,185,795	-				+0.2
4,185,877	+				+0.3
4,185,877	+				+0.6
4,185,877	+				-0.9
4,185,878	-				-0.2
4,185,879	+				-0.7
4,185,879	+				+0.1
4,185,879	+				+1.3
4,185,880	-				+0.5
4,185,880	-				+1.3
4,185,880	-				+0.6
4,185,880	-				+0.2
4,185,880	-				-0.3
4,185,880	-				-0.6
4,185,917	+				+1.1
4,185,917	+				+0.7
4,185,918	-				-1.1
4,185,918	-				+0.5
4,185,918	-				+0.5
4,185,924	+				+0.6
4,185,924	+				-0.2
4,185,924	+				+0.2
4,185,924	+				-0.2
4,185,924	+				+0.2
4,185,924	+				-0.7
4,185,925	-				+0.3
4,185,925	-				-1.2
4,185,962	+		PP_3682	0.20	+0.2
4,186,055	+		PP_3682	0.80	+0.7
4,186,055	+		PP_3682	0.80	-1.4
4,186,056	-		PP_3682	0.81	+0.2
4,186,064	+		PP_3682	0.86	-0.3
4,186,064	+		PP_3682	0.86	+0.3
4,186,064	+				+1.6
4,186,065	-		PP_3682	0.87	-0.0
4,186,091	+				-0.2
4,186,091	+				-2.7
4,186,092	-				-1.2
4,186,092	-				+0.4
4,186,138	+				+0.0
4,186,139	-				+0.2
4,186,139	-				-0.0
4,186,139	-				+0.1
4,186,142	+				+0.8
4,186,142	+				-1.7
4,186,143	-				+4.0
4,186,143	-				+0.2
4,186,181	+				-1.4
4,186,181	+				-0.4
4,186,181	+				-0.7
4,186,182	-				-0.2
4,186,182	-				-0.6
4,186,228	+				+0.2
4,186,228	+				+0.4
4,186,229	-				+1.7
4,186,283	+				-0.0
4,186,284	-				+0.9
4,186,284	-				-0.9
4,186,327	-				+2.2
4,186,387	+				-0.5
4,186,388	-				-1.6
4,186,417	+				-0.3
4,186,417	+				+0.1
4,186,426	+				-0.9
4,186,426	+				-0.3
4,186,426	+				-0.1
4,186,426	+				+0.3
4,186,494	+				-0.8
4,186,494	+				-0.0
4,186,494	+				-0.1
4,186,494	+				+3.9
4,186,494	+				-1.1
4,186,494	+				-4.6
4,186,495	-				+0.5
4,186,495	-				-2.8
4,186,495	-				+2.1
4,186,501	-				-1.2
4,186,516	+				+0.7
4,186,517	-				+0.1
4,186,517	-				-0.6
4,186,517	-				+0.1
4,186,526	+				+0.5
4,186,526	+				+0.4
4,186,526	+				+1.4
4,186,527	-				-1.6
4,186,527	-				-0.2
4,186,527	-				-0.2
4,186,527	-				-0.2
4,186,597	+				-0.1
4,186,610	+				+0.1
4,186,759	+				+0.7
4,186,774	+				-1.6
4,186,774	+				-0.4
4,186,774	+				+0.5
4,186,778	+				+1.0
4,186,778	+				-0.0
4,186,779	-		PP_3683	0.10	-1.2
4,186,779	-		PP_3683	0.10	+0.5
4,186,779	-		PP_3683	0.10	-0.8
4,186,836	+		PP_3683	0.15	+0.2
4,186,837	-		PP_3683	0.15	+0.3
4,186,837	-		PP_3683	0.15	+2.1
4,186,837	-		PP_3683	0.15	-0.0
4,186,931	+		PP_3683	0.22	+2.6
4,186,931	+		PP_3683	0.22	+2.5
4,186,932	-		PP_3683	0.22	-0.1
4,186,932	-		PP_3683	0.22	+0.0
4,186,932	-		PP_3683	0.22	+0.5
4,186,932	-		PP_3683	0.22	+0.8
4,186,932	-		PP_3683	0.22	-2.3
4,186,989	+		PP_3683	0.27	+0.0
4,186,989	+		PP_3683	0.27	+0.9
4,186,989	+		PP_3683	0.27	-0.3
4,186,989	+		PP_3683	0.27	+0.7
4,186,989	+		PP_3683	0.27	+1.3
4,186,989	+		PP_3683	0.27	+0.1
4,186,990	-		PP_3683	0.27	+0.3
4,186,990	-		PP_3683	0.27	+0.6
4,186,990	-				-0.8
4,187,073	+		PP_3683	0.34	+0.9
4,187,073	+		PP_3683	0.34	+0.2
4,187,074	-		PP_3683	0.34	+1.1
4,187,142	+		PP_3683	0.39	+0.4
4,187,143	-		PP_3683	0.39	+0.5
4,187,160	-		PP_3683	0.41	+0.9
4,187,200	+		PP_3683	0.44	+0.1
4,187,201	-		PP_3683	0.44	+0.2
4,187,258	+		PP_3683	0.49	+0.2
4,187,287	-		PP_3683	0.51	+0.3
4,187,298	+		PP_3683	0.52	+1.3
4,187,298	+		PP_3683	0.52	+0.1
4,187,298	+		PP_3683	0.52	+0.1
4,187,299	-		PP_3683	0.52	+0.4
4,187,362	+		PP_3683	0.57	+0.1
4,187,363	-		PP_3683	0.57	+0.2
4,187,376	+		PP_3683	0.58	+0.1
4,187,397	-		PP_3683	0.60	+1.0
4,187,397	-		PP_3683	0.60	+0.2
4,187,451	+		PP_3683	0.64	+0.2
4,187,451	+		PP_3683	0.64	+0.1
4,187,451	+		PP_3683	0.64	+0.3
4,187,451	+		PP_3683	0.64	-0.1
4,187,451	+		PP_3683	0.64	+0.8
4,187,451	+		PP_3683	0.64	-0.1
4,187,452	-		PP_3683	0.64	+0.2
4,187,452	-				+0.4
4,187,452	-		PP_3683	0.64	+0.6
4,187,452	-		PP_3683	0.64	-0.5
4,187,479	+		PP_3683	0.66	-0.8
4,187,480	-		PP_3683	0.67	+1.0
4,187,515	-		PP_3683	0.69	-0.3
4,187,515	-		PP_3683	0.69	+0.5
4,187,629	+		PP_3683	0.79	+0.7
4,187,684	+		PP_3683	0.83	+0.1
4,187,768	+		PP_3683	0.90	+0.2
4,187,768	+		PP_3683	0.90	-0.0
4,187,768	+		PP_3683	0.90	-1.1
4,187,768	+		PP_3683	0.90	-0.1
4,187,774	+				+0.1
4,187,809	-				+0.6
4,187,824	+				-0.2
4,187,824	+				-0.2
4,187,825	-				-0.2
4,187,825	-				-0.6
4,187,825	-				+1.4
4,187,825	-				+0.5
4,187,825	-				+1.1
4,187,825	-				+0.5
4,187,828	+				-0.9
4,187,828	+				+0.4
4,187,829	-				+0.3
4,187,852	+				-0.6
4,187,853	-				-0.4
4,187,893	+				-1.7
4,187,894	-				+0.3
4,187,975	-				+0.0
4,187,975	-				+1.4
4,187,989	+				+0.9
4,187,990	-				-0.1
4,188,060	+				+0.1
4,188,061	-				-0.2
4,188,061	-				+2.1
4,188,061	-				+1.3
4,188,065	-				-0.8
4,188,065	-				-0.5
4,188,065	-				-0.5
4,188,074	+				+0.0
4,188,127	+				+0.4
4,188,155	-		PP_3684	0.17	-0.8
4,188,183	+		PP_3684	0.26	+1.2
4,188,183	+		PP_3684	0.26	-1.0
4,188,184	-		PP_3684	0.26	-0.2
4,188,199	-		PP_3684	0.31	+0.4
4,188,232	+		PP_3684	0.42	-0.3
4,188,233	-		PP_3684	0.43	-0.1
4,188,325	+		PP_3684	0.73	+0.9
4,188,326	-		PP_3684	0.74	-1.0
4,188,326	-		PP_3684	0.74	-0.2
4,188,326	-		PP_3684	0.74	+0.5
4,188,495	-				+0.5
4,188,647	+				+1.4
4,188,648	-				+0.8
4,188,812	-				+0.4
4,188,846	+		PP_5611	0.13	+2.1
4,188,876	+		PP_5611	0.17	+0.3