Strain Fitness in Pseudomonas putida KT2440 around PP_0373

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0372 and PP_0373 are separated by 147 nucleotidesPP_0373 and PP_5444 are separated by 64 nucleotides PP_0372: PP_0372 - Acetylornithine aminotransferase 2, at 452,083 to 453,363 _0372 PP_0373: PP_0373 - conserved membrane protein of unknown function, at 453,511 to 453,669 _0373 PP_5444: PP_5444 - protein of unknown function, at 453,734 to 454,660 _5444 Position (kb) 453 454Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 452.538 kb on + strand, within PP_0372at 452.538 kb on + strand, within PP_0372at 452.539 kb on - strand, within PP_0372at 452.714 kb on + strand, within PP_0372at 452.860 kb on + strand, within PP_0372at 452.860 kb on + strand, within PP_0372at 453.113 kb on - strand, within PP_0372at 453.147 kb on - strand, within PP_0372at 453.240 kb on - strandat 453.240 kb on - strandat 453.240 kb on - strandat 453.240 kb on - strandat 453.477 kb on + strandat 453.478 kb on - strandat 453.478 kb on - strandat 453.478 kb on - strandat 453.489 kb on + strandat 453.489 kb on + strandat 453.519 kb on + strandat 453.597 kb on + strand, within PP_0373at 453.597 kb on + strand, within PP_0373at 453.597 kb on + strand, within PP_0373at 453.598 kb on - strand, within PP_0373at 453.598 kb on - strand, within PP_0373at 453.598 kb on - strand, within PP_0373at 453.598 kb on - strand, within PP_0373at 453.601 kb on - strand, within PP_0373at 453.622 kb on + strand, within PP_0373at 453.649 kb on + strand, within PP_0373at 453.649 kb on + strand, within PP_0373at 453.649 kb on + strand, within PP_0373at 453.650 kb on - strand, within PP_0373at 453.650 kb on - strand, within PP_0373at 453.650 kb on - strand, within PP_0373at 453.650 kb on - strand, within PP_0373at 453.650 kb on - strand, within PP_0373at 453.650 kb on - strand, within PP_0373at 453.651 kb on + strand, within PP_0373at 453.651 kb on + strand, within PP_0373at 453.652 kb on - strand, within PP_0373at 453.652 kb on - strand, within PP_0373at 453.652 kb on - strand, within PP_0373at 453.735 kb on + strandat 453.750 kb on - strandat 453.769 kb on - strandat 453.804 kb on + strandat 453.822 kb on + strandat 453.822 kb on + strandat 453.860 kb on - strand, within PP_5444at 453.860 kb on - strand, within PP_5444at 453.950 kb on - strand, within PP_5444at 454.065 kb on + strand, within PP_5444at 454.066 kb on - strand, within PP_5444at 454.066 kb on - strand, within PP_5444at 454.066 kb on - strand, within PP_5444at 454.066 kb on - strand, within PP_5444at 454.066 kb on - strand, within PP_5444at 454.066 kb on - strand, within PP_5444at 454.114 kb on - strand, within PP_5444at 454.152 kb on + strand, within PP_5444at 454.152 kb on + strandat 454.153 kb on - strand, within PP_5444at 454.153 kb on - strand, within PP_5444at 454.153 kb on - strand, within PP_5444at 454.210 kb on - strand, within PP_5444at 454.236 kb on + strand, within PP_5444at 454.236 kb on + strand, within PP_5444at 454.258 kb on + strand, within PP_5444at 454.292 kb on - strand, within PP_5444at 454.292 kb on - strand, within PP_5444at 454.340 kb on - strand, within PP_5444at 454.340 kb on - strand, within PP_5444at 454.388 kb on + strand, within PP_5444at 454.388 kb on + strand, within PP_5444at 454.574 kb on + strandat 454.574 kb on + strandat 454.575 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days
remove
452,538 + PP_0372 0.36 +1.8
452,538 + PP_0372 0.36 -0.3
452,539 - PP_0372 0.36 +2.3
452,714 + PP_0372 0.49 +0.3
452,860 + PP_0372 0.61 -1.4
452,860 + PP_0372 0.61 -1.3
453,113 - PP_0372 0.80 -0.3
453,147 - PP_0372 0.83 -0.3
453,240 - +1.2
453,240 - -0.0
453,240 - +0.4
453,240 - +0.9
453,477 + -0.1
453,478 - -0.1
453,478 - +0.1
453,478 - -0.9
453,489 + +1.2
453,489 + -1.0
453,519 + +0.7
453,597 + PP_0373 0.54 +1.4
453,597 + PP_0373 0.54 +0.5
453,597 + PP_0373 0.54 -0.3
453,598 - PP_0373 0.55 +4.7
453,598 - PP_0373 0.55 +0.9
453,598 - PP_0373 0.55 +0.5
453,598 - PP_0373 0.55 +0.6
453,601 - PP_0373 0.57 -1.0
453,622 + PP_0373 0.70 -1.7
453,649 + PP_0373 0.87 +0.2
453,649 + PP_0373 0.87 +0.8
453,649 + PP_0373 0.87 +0.1
453,650 - PP_0373 0.87 -0.6
453,650 - PP_0373 0.87 +1.5
453,650 - PP_0373 0.87 +0.6
453,650 - PP_0373 0.87 -0.4
453,650 - PP_0373 0.87 +5.2
453,650 - PP_0373 0.87 -0.1
453,651 + PP_0373 0.88 +0.1
453,651 + PP_0373 0.88 +0.9
453,652 - PP_0373 0.89 +0.6
453,652 - PP_0373 0.89 -1.0
453,652 - PP_0373 0.89 -0.8
453,735 + +0.7
453,750 - +0.5
453,769 - -0.5
453,804 + +1.7
453,822 + -0.7
453,822 + -0.6
453,860 - PP_5444 0.14 +0.3
453,860 - PP_5444 0.14 +0.5
453,950 - PP_5444 0.23 +1.6
454,065 + PP_5444 0.36 -1.1
454,066 - PP_5444 0.36 +0.3
454,066 - PP_5444 0.36 -2.5
454,066 - PP_5444 0.36 -0.5
454,066 - PP_5444 0.36 +0.6
454,066 - PP_5444 0.36 +0.4
454,066 - PP_5444 0.36 -0.5
454,114 - PP_5444 0.41 +1.0
454,152 + PP_5444 0.45 -0.1
454,152 + +0.1
454,153 - PP_5444 0.45 +0.5
454,153 - PP_5444 0.45 +3.0
454,153 - PP_5444 0.45 -0.2
454,210 - PP_5444 0.51 +0.5
454,236 + PP_5444 0.54 +0.2
454,236 + PP_5444 0.54 +0.1
454,258 + PP_5444 0.57 -0.2
454,292 - PP_5444 0.60 -0.5
454,292 - PP_5444 0.60 -1.0
454,340 - PP_5444 0.65 -0.6
454,340 - PP_5444 0.65 -0.2
454,388 + PP_5444 0.71 +0.6
454,388 + PP_5444 0.71 +0.1
454,574 + +1.0
454,574 + +0.9
454,575 - -0.2

Or see this region's nucleotide sequence