Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4967 and PP_4968 are separated by 228 nucleotides PP_4968 and PP_4969 are separated by 132 nucleotides PP_4969 and PP_4970 are separated by 74 nucleotides
PP_4967: PP_4967 - methionine adenosyltransferase, at 5,658,957 to 5,660,147
_4967
PP_4968: PP_4968 - DNA ligase B, at 5,660,376 to 5,662,076
_4968
PP_4969: PP_4969 - conserved exported protein of unknown function, at 5,662,209 to 5,662,601
_4969
PP_4970: PP_4970 - putative Cytochrome c', at 5,662,676 to 5,663,143
_4970
Position (kb) 5660
5661
5662
5663 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 5660.146 kb on - strand at 5660.211 kb on + strand at 5660.294 kb on + strand at 5660.295 kb on - strand at 5660.295 kb on - strand at 5660.295 kb on - strand at 5660.338 kb on - strand at 5660.382 kb on + strand at 5660.383 kb on - strand at 5660.404 kb on + strand at 5660.405 kb on - strand at 5660.405 kb on - strand at 5660.520 kb on + strand at 5660.520 kb on + strand at 5660.520 kb on + strand at 5660.536 kb on + strand at 5660.536 kb on + strand at 5660.537 kb on - strand at 5660.560 kb on - strand, within PP_4968 at 5660.779 kb on - strand, within PP_4968 at 5660.824 kb on + strand, within PP_4968 at 5660.824 kb on + strand, within PP_4968 at 5660.824 kb on + strand, within PP_4968 at 5660.824 kb on + strand, within PP_4968 at 5660.919 kb on + strand, within PP_4968 at 5660.919 kb on + strand, within PP_4968 at 5660.920 kb on - strand, within PP_4968 at 5660.920 kb on - strand, within PP_4968 at 5661.127 kb on - strand, within PP_4968 at 5661.271 kb on - strand, within PP_4968 at 5661.291 kb on + strand, within PP_4968 at 5661.291 kb on + strand, within PP_4968 at 5661.291 kb on + strand, within PP_4968 at 5661.292 kb on - strand, within PP_4968 at 5661.292 kb on - strand, within PP_4968 at 5661.292 kb on - strand, within PP_4968 at 5661.297 kb on + strand, within PP_4968 at 5661.298 kb on - strand, within PP_4968 at 5661.648 kb on - strand, within PP_4968 at 5661.648 kb on - strand, within PP_4968 at 5661.715 kb on + strand, within PP_4968 at 5661.716 kb on - strand, within PP_4968 at 5662.036 kb on + strand at 5662.036 kb on + strand at 5662.037 kb on - strand at 5662.037 kb on - strand at 5662.089 kb on + strand at 5662.090 kb on - strand at 5662.090 kb on - strand at 5662.090 kb on - strand at 5662.142 kb on - strand at 5662.142 kb on - strand at 5662.195 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days remove 5,660,146 - -1.6 5,660,211 + +1.3 5,660,294 + +0.7 5,660,295 - -0.0 5,660,295 - -0.6 5,660,295 - -1.2 5,660,338 - +0.9 5,660,382 + +2.7 5,660,383 - +0.9 5,660,404 + +4.4 5,660,405 - -0.6 5,660,405 - -0.8 5,660,520 + +0.6 5,660,520 + +3.7 5,660,520 + +0.9 5,660,536 + -1.0 5,660,536 + -0.6 5,660,537 - +0.7 5,660,560 - PP_4968 0.11 -0.1 5,660,779 - PP_4968 0.24 -0.5 5,660,824 + PP_4968 0.26 +0.4 5,660,824 + PP_4968 0.26 +0.9 5,660,824 + PP_4968 0.26 +0.3 5,660,824 + PP_4968 0.26 +0.9 5,660,919 + PP_4968 0.32 -0.7 5,660,919 + PP_4968 0.32 +2.1 5,660,920 - PP_4968 0.32 -0.8 5,660,920 - PP_4968 0.32 -0.8 5,661,127 - PP_4968 0.44 +3.2 5,661,271 - PP_4968 0.53 +0.6 5,661,291 + PP_4968 0.54 +0.4 5,661,291 + PP_4968 0.54 +1.7 5,661,291 + PP_4968 0.54 +0.9 5,661,292 - PP_4968 0.54 +0.4 5,661,292 - PP_4968 0.54 -0.5 5,661,292 - PP_4968 0.54 +2.7 5,661,297 + PP_4968 0.54 +2.2 5,661,298 - PP_4968 0.54 +1.6 5,661,648 - PP_4968 0.75 +0.1 5,661,648 - PP_4968 0.75 -0.9 5,661,715 + PP_4968 0.79 +4.5 5,661,716 - PP_4968 0.79 +1.2 5,662,036 + +1.2 5,662,036 + +0.1 5,662,037 - +0.8 5,662,037 - -0.1 5,662,089 + +0.4 5,662,090 - +0.0 5,662,090 - +0.4 5,662,090 - -0.1 5,662,142 - -0.4 5,662,142 - -1.0 5,662,195 + +2.9
Or see this region's nucleotide sequence