Strain Fitness in Pseudomonas putida KT2440 around PP_0141

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0139 and PP_0140 overlap by 4 nucleotidesPP_0140 and PP_0141 are separated by 3 nucleotidesPP_0141 and PP_0142 overlap by 4 nucleotides PP_0139: PP_0139 - putative Lipoprotein, at 147,454 to 148,089 _0139 PP_0140: PP_0140 - conserved protein of unknown function, at 148,086 to 149,024 _0140 PP_0141: PP_0141 - putative ABC transporter, ATP-binding protein, at 149,028 to 149,819 _0141 PP_0142: PP_0142 - putative ABC transporter, permease protein, at 149,816 to 150,949 _0142 Position (kb) 149 150Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 148.126 kb on + strandat 148.268 kb on + strand, within PP_0140at 148.269 kb on - strand, within PP_0140at 148.269 kb on - strand, within PP_0140at 148.515 kb on + strand, within PP_0140at 148.515 kb on + strand, within PP_0140at 148.515 kb on + strand, within PP_0140at 148.515 kb on + strand, within PP_0140at 148.515 kb on + strand, within PP_0140at 148.515 kb on + strand, within PP_0140at 148.515 kb on + strand, within PP_0140at 148.515 kb on + strand, within PP_0140at 148.515 kb on + strand, within PP_0140at 148.515 kb on + strand, within PP_0140at 148.516 kb on - strand, within PP_0140at 148.516 kb on - strand, within PP_0140at 148.516 kb on - strand, within PP_0140at 148.516 kb on - strand, within PP_0140at 148.516 kb on - strand, within PP_0140at 148.516 kb on - strand, within PP_0140at 148.516 kb on - strand, within PP_0140at 148.516 kb on - strand, within PP_0140at 148.656 kb on - strand, within PP_0140at 148.849 kb on + strand, within PP_0140at 148.849 kb on + strand, within PP_0140at 148.849 kb on + strand, within PP_0140at 148.906 kb on + strand, within PP_0140at 148.906 kb on + strand, within PP_0140at 148.907 kb on - strand, within PP_0140at 148.907 kb on - strand, within PP_0140at 148.995 kb on + strandat 148.995 kb on + strandat 149.092 kb on + strandat 149.093 kb on - strandat 149.194 kb on + strand, within PP_0141at 149.194 kb on + strand, within PP_0141at 149.194 kb on + strand, within PP_0141at 149.194 kb on + strand, within PP_0141at 149.195 kb on - strand, within PP_0141at 149.195 kb on - strand, within PP_0141at 149.195 kb on - strand, within PP_0141at 149.195 kb on - strand, within PP_0141at 149.256 kb on - strand, within PP_0141at 149.256 kb on - strand, within PP_0141at 149.704 kb on - strand, within PP_0141at 149.704 kb on - strand, within PP_0141at 149.800 kb on - strandat 150.002 kb on + strand, within PP_0142at 150.084 kb on - strand, within PP_0142at 150.396 kb on - strand, within PP_0142at 150.460 kb on + strand, within PP_0142at 150.460 kb on + strand, within PP_0142at 150.460 kb on + strand, within PP_0142at 150.460 kb on + strand, within PP_0142at 150.460 kb on + strand, within PP_0142at 150.461 kb on - strand, within PP_0142at 150.461 kb on - strand, within PP_0142at 150.461 kb on - strand, within PP_0142at 150.461 kb on - strand, within PP_0142at 150.593 kb on - strand, within PP_0142at 150.649 kb on - strand, within PP_0142at 150.666 kb on + strand, within PP_0142at 150.666 kb on + strand, within PP_0142at 150.666 kb on + strand, within PP_0142at 150.666 kb on + strand, within PP_0142

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days
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148,126 + -0.2
148,268 + PP_0140 0.19 -0.5
148,269 - PP_0140 0.19 +0.1
148,269 - PP_0140 0.19 -1.3
148,515 + PP_0140 0.46 -1.2
148,515 + PP_0140 0.46 -0.8
148,515 + PP_0140 0.46 +1.6
148,515 + PP_0140 0.46 +0.7
148,515 + PP_0140 0.46 +0.3
148,515 + PP_0140 0.46 -0.7
148,515 + PP_0140 0.46 +0.9
148,515 + PP_0140 0.46 +3.2
148,515 + PP_0140 0.46 -2.9
148,515 + PP_0140 0.46 -0.2
148,516 - PP_0140 0.46 -1.0
148,516 - PP_0140 0.46 -0.2
148,516 - PP_0140 0.46 +2.1
148,516 - PP_0140 0.46 -1.2
148,516 - PP_0140 0.46 +1.8
148,516 - PP_0140 0.46 -1.1
148,516 - PP_0140 0.46 +1.0
148,516 - PP_0140 0.46 -0.4
148,656 - PP_0140 0.61 -1.3
148,849 + PP_0140 0.81 -0.9
148,849 + PP_0140 0.81 -0.1
148,849 + PP_0140 0.81 +0.4
148,906 + PP_0140 0.87 -0.7
148,906 + PP_0140 0.87 +0.7
148,907 - PP_0140 0.87 -2.1
148,907 - PP_0140 0.87 +0.4
148,995 + +1.5
148,995 + -1.8
149,092 + -0.3
149,093 - +0.0
149,194 + PP_0141 0.21 -0.2
149,194 + PP_0141 0.21 +0.6
149,194 + PP_0141 0.21 +0.4
149,194 + PP_0141 0.21 +1.4
149,195 - PP_0141 0.21 +0.8
149,195 - PP_0141 0.21 -0.9
149,195 - PP_0141 0.21 -2.7
149,195 - PP_0141 0.21 +0.3
149,256 - PP_0141 0.29 +0.2
149,256 - PP_0141 0.29 +0.9
149,704 - PP_0141 0.85 -0.4
149,704 - PP_0141 0.85 -0.3
149,800 - -0.1
150,002 + PP_0142 0.16 -0.9
150,084 - PP_0142 0.24 +0.5
150,396 - PP_0142 0.51 +0.2
150,460 + PP_0142 0.57 -0.5
150,460 + PP_0142 0.57 -0.9
150,460 + PP_0142 0.57 +1.0
150,460 + PP_0142 0.57 -1.0
150,460 + PP_0142 0.57 +0.5
150,461 - PP_0142 0.57 +0.0
150,461 - PP_0142 0.57 +1.7
150,461 - PP_0142 0.57 +0.6
150,461 - PP_0142 0.57 -0.6
150,593 - PP_0142 0.69 -0.7
150,649 - PP_0142 0.73 -1.2
150,666 + PP_0142 0.75 -0.5
150,666 + PP_0142 0.75 +2.0
150,666 + PP_0142 0.75 +0.2
150,666 + PP_0142 0.75 +0.2

Or see this region's nucleotide sequence