Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rimJ and yceH are separated by 10 nucleotides yceH and mviM are separated by 1 nucleotides mviM and mviN are separated by 109 nucleotides
b1066: rimJ - ribosomal-protein-S5-alanine N-acetyltransferase (NCBI), at 1,124,785 to 1,125,369
rimJ
b1067: yceH - hypothetical protein (NCBI), at 1,125,380 to 1,126,027
yceH
b1068: mviM - predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain (NCBI), at 1,126,029 to 1,126,952
mviM
b1069: mviN - predicted inner membrane protein (NCBI), at 1,127,062 to 1,128,597
mviN
Position (kb) 1126
1127 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 1125.088 kb on + strand, within rimJ at 1125.142 kb on - strand, within rimJ at 1125.142 kb on - strand, within rimJ at 1125.157 kb on - strand, within rimJ at 1125.169 kb on + strand, within rimJ at 1125.173 kb on + strand, within rimJ at 1125.181 kb on - strand, within rimJ at 1125.184 kb on - strand, within rimJ at 1125.236 kb on - strand, within rimJ at 1125.289 kb on - strand, within rimJ at 1125.289 kb on - strand, within rimJ at 1125.352 kb on - strand at 1125.407 kb on - strand at 1125.468 kb on + strand at 1125.586 kb on - strand, within yceH at 1125.605 kb on - strand, within yceH at 1125.725 kb on - strand, within yceH at 1125.725 kb on - strand, within yceH at 1125.862 kb on + strand, within yceH at 1125.937 kb on - strand, within yceH at 1126.116 kb on + strand at 1126.190 kb on - strand, within mviM at 1126.238 kb on + strand, within mviM at 1126.238 kb on + strand, within mviM at 1126.248 kb on + strand, within mviM at 1126.277 kb on + strand, within mviM at 1126.341 kb on - strand, within mviM at 1126.341 kb on - strand, within mviM at 1126.341 kb on - strand, within mviM at 1126.409 kb on + strand, within mviM at 1126.409 kb on + strand, within mviM at 1126.409 kb on + strand, within mviM at 1126.409 kb on + strand, within mviM at 1126.417 kb on - strand, within mviM at 1126.417 kb on - strand, within mviM at 1126.417 kb on - strand, within mviM at 1126.418 kb on - strand, within mviM at 1126.418 kb on - strand, within mviM at 1126.461 kb on + strand, within mviM at 1126.478 kb on - strand, within mviM at 1126.478 kb on - strand, within mviM at 1126.495 kb on + strand, within mviM at 1126.509 kb on + strand, within mviM at 1126.595 kb on - strand, within mviM at 1126.668 kb on - strand, within mviM at 1126.730 kb on - strand, within mviM at 1126.730 kb on - strand, within mviM at 1126.766 kb on + strand, within mviM at 1126.777 kb on - strand, within mviM at 1126.815 kb on - strand, within mviM at 1126.925 kb on + strand at 1126.925 kb on + strand at 1126.926 kb on + strand at 1126.956 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 1,125,088 + rimJ b1066 0.52 -0.0 1,125,142 - rimJ b1066 0.61 -1.0 1,125,142 - rimJ b1066 0.61 -1.2 1,125,157 - rimJ b1066 0.64 -0.2 1,125,169 + rimJ b1066 0.66 +0.1 1,125,173 + rimJ b1066 0.66 -0.8 1,125,181 - rimJ b1066 0.68 -1.7 1,125,184 - rimJ b1066 0.68 -0.5 1,125,236 - rimJ b1066 0.77 -1.3 1,125,289 - rimJ b1066 0.86 +0.4 1,125,289 - rimJ b1066 0.86 -0.0 1,125,352 - +0.8 1,125,407 - +0.6 1,125,468 + +3.3 1,125,586 - yceH b1067 0.32 +0.6 1,125,605 - yceH b1067 0.35 -0.0 1,125,725 - yceH b1067 0.53 +0.3 1,125,725 - yceH b1067 0.53 -0.6 1,125,862 + yceH b1067 0.74 -0.3 1,125,937 - yceH b1067 0.86 +1.1 1,126,116 + -0.3 1,126,190 - mviM b1068 0.17 -0.4 1,126,238 + mviM b1068 0.23 +0.3 1,126,238 + mviM b1068 0.23 -0.2 1,126,248 + mviM b1068 0.24 -0.5 1,126,277 + mviM b1068 0.27 -0.0 1,126,341 - mviM b1068 0.34 -0.2 1,126,341 - mviM b1068 0.34 +0.3 1,126,341 - mviM b1068 0.34 -0.7 1,126,409 + mviM b1068 0.41 -1.2 1,126,409 + mviM b1068 0.41 +0.4 1,126,409 + mviM b1068 0.41 +1.4 1,126,409 + mviM b1068 0.41 -1.6 1,126,417 - mviM b1068 0.42 +0.9 1,126,417 - mviM b1068 0.42 -0.0 1,126,417 - mviM b1068 0.42 -1.0 1,126,418 - mviM b1068 0.42 -0.9 1,126,418 - mviM b1068 0.42 -1.5 1,126,461 + mviM b1068 0.47 -0.7 1,126,478 - mviM b1068 0.49 -0.5 1,126,478 - mviM b1068 0.49 -0.2 1,126,495 + mviM b1068 0.50 -3.9 1,126,509 + mviM b1068 0.52 -0.4 1,126,595 - mviM b1068 0.61 -0.3 1,126,668 - mviM b1068 0.69 -1.5 1,126,730 - mviM b1068 0.76 -1.2 1,126,730 - mviM b1068 0.76 -2.1 1,126,766 + mviM b1068 0.80 -1.3 1,126,777 - mviM b1068 0.81 -0.5 1,126,815 - mviM b1068 0.85 -2.0 1,126,925 + -0.9 1,126,925 + -0.3 1,126,926 + -2.1 1,126,956 + -0.4
Or see this region's nucleotide sequence