Strain Fitness in Escherichia coli BW25113 around b3481

Experiment: Mixed culture, Halobacteriovorax-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture, Halobacteriovorax-1
3,615,706	-	nikD	b3479	0.87	-0.4
3,615,708	+	nikD	b3479	0.88	-0.2
3,615,708	+	nikD	b3479	0.88	-1.1
3,615,711	-	nikD	b3479	0.88	+0.4
3,615,729	+				+0.4
3,615,735	+				-0.1
3,615,735	+				+0.5
3,615,783	+				+0.3
3,615,783	+				-0.4
3,615,820	+				-0.8
3,615,892	+	nikE	b3480	0.12	-1.0
3,615,892	+	nikE	b3480	0.12	+0.8
3,615,899	+	nikE	b3480	0.12	+0.2
3,615,966	+	nikE	b3480	0.21	-0.5
3,615,966	+	nikE	b3480	0.21	-0.3
3,615,966	+	nikE	b3480	0.21	+0.1
3,615,977	+	nikE	b3480	0.22	-1.0
3,616,047	+	nikE	b3480	0.31	-0.5
3,616,078	+	nikE	b3480	0.35	-0.1
3,616,091	+	nikE	b3480	0.36	+0.4
3,616,110	+	nikE	b3480	0.39	-1.2
3,616,157	-	nikE	b3480	0.44	+0.9
3,616,224	+	nikE	b3480	0.53	-0.6
3,616,287	-	nikE	b3480	0.60	-0.6
3,616,424	-	nikE	b3480	0.77	+0.7
3,616,444	-	nikE	b3480	0.80	-0.7
3,616,444	-	nikE	b3480	0.80	-1.0
3,616,490	+	nikE	b3480	0.86	-1.9
3,616,572	-				-1.4
3,616,691	-	nikR	b3481	0.20	+1.7
3,616,721	-	nikR	b3481	0.27	-0.6
3,616,723	+	nikR	b3481	0.28	-0.7
3,616,743	+	nikR	b3481	0.33	-0.5
3,616,764	-	nikR	b3481	0.38	-1.0
3,616,793	-	nikR	b3481	0.45	+0.6
3,616,793	-	nikR	b3481	0.45	+1.0
3,616,815	-	nikR	b3481	0.51	+1.1
3,616,853	+	nikR	b3481	0.60	+1.3
3,616,853	+	nikR	b3481	0.60	+1.6
3,616,872	+	nikR	b3481	0.65	+0.0
3,616,932	+	nikR	b3481	0.80	-1.0
3,616,937	+	nikR	b3481	0.81	+1.1
3,617,048	-				-0.3
3,617,063	+				-0.4
3,617,063	+				-0.3
3,617,065	-				-0.2
3,617,069	-				+1.0
3,617,069	-				+0.6
3,617,069	-				+1.6
3,617,083	-				+0.0
3,617,083	-				+0.5
3,617,085	+				+0.8
3,617,177	+				+0.1
3,617,200	+				-0.0
3,617,251	+				+0.1
3,617,251	+				-1.4
3,617,290	+				+0.3