Strain Fitness in Escherichia coli BW25113 around b2150
Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Mixed culture, Halobacteriovorax-1 |
---|---|---|---|---|---|
remove | |||||
2,236,387 | - | mglA | b2149 | 0.39 | -1.6 |
2,236,421 | - | mglA | b2149 | 0.41 | +0.1 |
2,236,446 | + | mglA | b2149 | 0.43 | +2.6 |
2,236,466 | - | mglA | b2149 | 0.44 | -1.6 |
2,236,478 | - | mglA | b2149 | 0.45 | -1.7 |
2,236,510 | - | mglA | b2149 | 0.47 | +1.0 |
2,236,510 | - | mglA | b2149 | 0.47 | +0.2 |
2,236,559 | + | mglA | b2149 | 0.50 | +1.0 |
2,236,579 | - | mglA | b2149 | 0.52 | -1.1 |
2,236,579 | - | mglA | b2149 | 0.52 | +0.2 |
2,236,626 | - | mglA | b2149 | 0.55 | -0.8 |
2,236,697 | + | mglA | b2149 | 0.60 | +2.6 |
2,236,697 | + | mglA | b2149 | 0.60 | +0.2 |
2,236,774 | + | mglA | b2149 | 0.65 | +2.6 |
2,236,895 | + | mglA | b2149 | 0.73 | +2.6 |
2,236,901 | - | mglA | b2149 | 0.73 | -0.6 |
2,236,943 | - | mglA | b2149 | 0.76 | -1.7 |
2,236,947 | + | mglA | b2149 | 0.76 | +2.6 |
2,236,959 | + | mglA | b2149 | 0.77 | -0.4 |
2,236,962 | - | mglA | b2149 | 0.77 | +1.6 |
2,236,962 | - | mglA | b2149 | 0.77 | +0.9 |
2,236,988 | + | mglA | b2149 | 0.79 | -0.2 |
2,236,988 | - | mglA | b2149 | 0.79 | -2.0 |
2,237,034 | + | mglA | b2149 | 0.82 | +1.0 |
2,237,079 | - | mglA | b2149 | 0.85 | -0.2 |
2,237,084 | + | mglA | b2149 | 0.85 | +1.0 |
2,237,193 | + | -0.2 | |||
2,237,238 | - | -1.4 | |||
2,237,249 | - | +0.4 | |||
2,237,267 | - | -2.3 | |||
2,237,291 | - | +0.4 | |||
2,237,296 | - | +0.9 | |||
2,237,296 | - | -0.8 | |||
2,237,336 | - | +0.2 | |||
2,237,356 | - | +0.0 | |||
2,237,356 | - | -0.3 | |||
2,237,356 | - | +0.8 | |||
2,237,356 | - | -1.4 | |||
2,237,407 | - | -1.0 | |||
2,237,407 | - | +0.3 | |||
2,237,422 | - | +0.1 | |||
2,237,422 | - | -0.0 | |||
2,237,430 | - | -1.8 | |||
2,237,530 | - | mglB | b2150 | 0.16 | -0.3 |
2,237,897 | - | mglB | b2150 | 0.53 | -0.5 |
2,237,901 | + | mglB | b2150 | 0.53 | +0.8 |
2,237,927 | - | mglB | b2150 | 0.56 | -1.9 |
2,237,989 | - | mglB | b2150 | 0.62 | -1.7 |
2,238,223 | - | mglB | b2150 | 0.85 | -0.8 |
2,238,269 | + | mglB | b2150 | 0.90 | -0.8 |
2,238,309 | + | -0.9 | |||
2,238,309 | + | -2.5 | |||
2,238,488 | + | +0.6 | |||
2,238,488 | + | -2.4 | |||
2,238,602 | + | +1.6 | |||
2,238,602 | + | +0.8 | |||
2,238,647 | + | +0.4 | |||
2,238,762 | - | galS | b2151 | 0.11 | +0.1 |
2,238,762 | - | galS | b2151 | 0.11 | +0.4 |
2,238,839 | - | galS | b2151 | 0.18 | -1.4 |
2,238,857 | - | galS | b2151 | 0.20 | +0.4 |
2,239,012 | + | galS | b2151 | 0.35 | -1.5 |
2,239,042 | - | galS | b2151 | 0.38 | +1.0 |
2,239,066 | + | galS | b2151 | 0.40 | -1.1 |
2,239,098 | - | galS | b2151 | 0.43 | +2.3 |
2,239,098 | - | galS | b2151 | 0.43 | -0.8 |
2,239,112 | - | galS | b2151 | 0.44 | +0.7 |
2,239,267 | - | galS | b2151 | 0.59 | +0.7 |
Or see this region's nucleotide sequence