Strain Fitness in Escherichia coli BW25113 around b1559

Experiment: Mixed culture, Halobacteriovorax-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture, Halobacteriovorax-1
1,639,632	-				-0.3
1,639,632	-				+0.4
1,639,733	-				+0.9
1,639,753	-				+1.8
1,639,797	+				+2.4
1,639,806	-				+2.4
1,639,834	-				+1.4
1,640,045	+	cspF	b1558	0.78	+0.6
1,640,045	+	cspF	b1558	0.78	+0.4
1,640,069	-	cspF	b1558	0.89	+2.4
1,640,110	+				-0.1
1,640,118	-				+2.4
1,640,124	+				-0.2
1,640,128	+				-0.6
1,640,132	-				-0.2
1,640,132	-				-1.0
1,640,132	-				-1.8
1,640,203	+				-0.9
1,640,204	-				+2.4
1,640,204	-				+2.4
1,640,204	-				+2.4
1,640,265	+				+0.4
1,640,350	+				-1.1
1,640,365	-				+0.6
1,640,603	-	b1559	b1559	0.12	+0.2
1,640,620	-	b1559	b1559	0.14	-0.2
1,640,620	-	b1559	b1559	0.14	-2.3
1,640,635	-	b1559	b1559	0.16	-1.1
1,640,635	-	b1559	b1559	0.16	-1.8
1,640,771	-	b1559	b1559	0.34	+1.1
1,640,876	-	b1559	b1559	0.48	+0.8
1,640,876	-	b1559	b1559	0.48	-0.1
1,640,884	+	b1559	b1559	0.49	-1.3
1,640,884	+	b1559	b1559	0.49	+1.4
1,640,967	-	b1559	b1559	0.60	-1.0
1,641,185	-	b1559	b1559	0.89	+0.0
1,641,196	+				-0.2
1,641,253	+				+2.4
1,641,585	+	ydfU	b1560	0.29	+0.5
1,641,585	+	ydfU	b1560	0.29	-1.1
1,641,779	+	ydfU	b1560	0.48	-1.2
1,641,831	-	ydfU	b1560	0.53	+0.6
1,641,934	-	ydfU	b1560	0.62	-0.2
1,642,013	-	ydfU	b1560	0.70	-1.5
1,642,253	-				-1.5