Strain Fitness in Pseudomonas putida KT2440 around PP_4924

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
5,597,074	-		PP_4923	0.40	+0.5
5,597,160	+		PP_4923	0.46	+1.1
5,597,161	-		PP_4923	0.46	-0.3
5,597,161	-		PP_4923	0.46	+0.4
5,597,161	-		PP_4923	0.46	+1.3
5,597,161	-		PP_4923	0.46	+0.3
5,597,169	-		PP_4923	0.47	-0.3
5,597,182	+		PP_4923	0.48	-1.7
5,597,182	+		PP_4923	0.48	+0.8
5,597,182	+				+2.4
5,597,183	-		PP_4923	0.48	-1.2
5,597,183	-		PP_4923	0.48	+0.6
5,597,183	-		PP_4923	0.48	+1.3
5,597,187	-		PP_4923	0.48	-0.8
5,597,187	-		PP_4923	0.48	+0.2
5,597,198	-		PP_4923	0.49	-1.6
5,597,277	+		PP_4923	0.54	+0.1
5,597,278	-		PP_4923	0.54	+1.0
5,597,415	+		PP_4923	0.64	+0.2
5,597,415	+		PP_4923	0.64	-1.0
5,597,416	-		PP_4923	0.64	+0.8
5,597,416	-		PP_4923	0.64	+0.2
5,597,461	+		PP_4923	0.67	+0.5
5,597,461	+		PP_4923	0.67	-0.3
5,597,462	-		PP_4923	0.67	-1.5
5,597,462	-		PP_4923	0.67	-0.6
5,597,462	-		PP_4923	0.67	-2.9
5,597,470	-		PP_4923	0.68	-1.9
5,597,470	-		PP_4923	0.68	-1.1
5,597,614	+		PP_4923	0.78	-0.2
5,597,615	-		PP_4923	0.78	-1.0
5,597,615	-		PP_4923	0.78	+1.4
5,597,730	+		PP_4923	0.86	-1.5
5,597,730	+		PP_4923	0.86	+0.5
5,597,731	-		PP_4923	0.86	+1.1
5,597,731	-		PP_4923	0.86	+1.7
5,597,748	+		PP_4923	0.87	-1.6
5,597,748	+		PP_4923	0.87	-0.6
5,597,749	-		PP_4923	0.87	-2.1
5,597,757	-		PP_4923	0.88	-0.4
5,597,769	+		PP_4923	0.88	-2.4
5,597,844	+				+4.0
5,597,859	+				-2.4
5,597,859	+				+2.4
5,597,860	-				+1.5
5,598,037	+				+0.9
5,598,038	-				-1.1
5,598,038	-				+0.6
5,598,038	-				+0.4
5,598,108	+				+1.8
5,598,108	+				-0.2
5,598,108	+				+1.7
5,598,108	+				+1.2
5,598,108	+				-0.6
5,598,108	+				-0.7
5,598,108	+				-2.5
5,598,285	+				-2.1
5,598,285	+				-1.5
5,598,285	+				-1.5
5,598,329	+				+1.9
5,598,330	-				+1.4
5,598,343	+				+0.6
5,598,343	+				-1.8
5,598,344	-				+0.9
5,598,344	-				+0.8
5,598,344	-				-0.8
5,598,344	-				-0.0
5,598,344	-				+1.4
5,598,344	-				-0.1
5,598,344	-				-0.2
5,598,344	-				+1.6
5,598,345	+				-2.4
5,598,345	+				-1.6
5,598,345	+				-0.2
5,598,345	+				+1.1
5,598,345	+				-1.0
5,598,346	-				-1.1
5,598,382	+				-2.9
5,598,463	+				+0.7
5,598,522	-				-1.2
5,598,584	+				+0.3
5,598,584	+				-1.3
5,598,584	+				+0.6
5,598,584	+				+0.6
5,598,585	-				+1.5
5,598,585	-				+1.4
5,598,585	-				-0.8
5,598,586	+				-1.0
5,598,586	+				+1.9
5,598,587	-				+0.3
5,598,587	-				+0.4
5,598,587	-				+0.9
5,598,587	-				+0.7
5,598,783	+		PP_4924	0.13	-0.4
5,598,783	+		PP_4924	0.13	+0.3
5,598,784	-		PP_4924	0.13	+1.0
5,598,784	-		PP_4924	0.13	+1.7
5,598,928	+		PP_4924	0.16	+2.0
5,598,928	+		PP_4924	0.16	-0.2
5,598,929	-		PP_4924	0.16	+0.4
5,598,937	-				+0.2
5,598,972	+		PP_4924	0.17	-0.5
5,598,998	+		PP_4924	0.17	-1.3
5,598,999	-				+2.4
5,599,047	+		PP_4924	0.18	-0.5
5,599,047	+		PP_4924	0.18	+0.2
5,599,048	-		PP_4924	0.18	+0.5
5,599,117	-		PP_4924	0.19	-0.6
5,599,117	-		PP_4924	0.19	-0.9
5,599,150	-		PP_4924	0.20	-1.3
5,599,180	-		PP_4924	0.21	+0.6
5,599,180	-		PP_4924	0.21	-2.8
5,599,256	+		PP_4924	0.22	+0.3
5,599,257	-		PP_4924	0.22	+0.7
5,599,272	-		PP_4924	0.22	+1.1
5,599,357	-		PP_4924	0.24	-0.6
5,599,357	-		PP_4924	0.24	-0.9
5,599,357	-		PP_4924	0.24	+2.4
5,599,357	-		PP_4924	0.24	-3.4
5,599,357	-		PP_4924	0.24	+0.7
5,599,498	+		PP_4924	0.26	+2.6
5,599,498	+		PP_4924	0.26	-1.9
5,599,500	-		PP_4924	0.27	+3.0
5,599,764	-		PP_4924	0.31	-1.6
5,599,815	-		PP_4924	0.32	+0.9
5,599,815	-		PP_4924	0.32	-2.1
5,599,815	-		PP_4924	0.32	-1.5
5,599,970	+		PP_4924	0.35	+0.6
5,599,971	-		PP_4924	0.35	+1.0
5,600,188	-		PP_4924	0.39	-1.4
5,600,227	+				+3.4
5,600,227	+		PP_4924	0.40	+0.9
5,600,260	-		PP_4924	0.41	-2.2
5,600,260	-		PP_4924	0.41	-1.2
5,600,260	-		PP_4924	0.41	+1.0
5,600,287	-		PP_4924	0.41	-2.2
5,600,313	+		PP_4924	0.42	-0.3
5,600,314	-		PP_4924	0.42	+1.8
5,600,353	+		PP_4924	0.42	-1.2
5,600,360	+		PP_4924	0.42	-0.8
5,600,360	+		PP_4924	0.42	-1.3
5,600,361	-		PP_4924	0.42	+1.0
5,600,361	-		PP_4924	0.42	-1.2
5,600,361	-		PP_4924	0.42	-0.3
5,600,361	-		PP_4924	0.42	+0.6
5,600,361	-		PP_4924	0.42	+1.2
5,600,412	-		PP_4924	0.43	+1.1
5,600,436	-		PP_4924	0.44	+0.6
5,600,565	+		PP_4924	0.46	-3.2
5,600,644	+		PP_4924	0.48	+1.0
5,600,678	-		PP_4924	0.48	-2.9
5,600,705	+		PP_4924	0.49	+1.6
5,600,758	+		PP_4924	0.50	+0.4
5,601,011	-		PP_4924	0.54	+0.5
5,601,202	-		PP_4924	0.58	-0.6
5,601,202	-		PP_4924	0.58	-1.8
5,601,215	+		PP_4924	0.58	+1.0
5,601,216	-		PP_4924	0.58	-0.1
5,601,216	-		PP_4924	0.58	+1.4
5,601,347	+		PP_4924	0.61	-1.9
5,601,354	+		PP_4924	0.61	-3.1
5,601,354	+		PP_4924	0.61	+2.0
5,601,355	-		PP_4924	0.61	-1.4
5,601,401	+		PP_4924	0.62	-1.8
5,601,402	-		PP_4924	0.62	+0.0
5,601,402	-		PP_4924	0.62	+0.3
5,601,402	-		PP_4924	0.62	+0.1
5,601,438	+		PP_4924	0.62	+0.6
5,601,691	+		PP_4924	0.67	-3.0
5,601,691	+		PP_4924	0.67	-2.1
5,601,716	+		PP_4924	0.67	-4.0
5,601,716	+		PP_4924	0.67	-1.7
5,601,716	+		PP_4924	0.67	-0.8
5,601,716	+		PP_4924	0.67	-0.7
5,601,717	-		PP_4924	0.67	+0.5
5,601,717	-		PP_4924	0.67	+1.0
5,601,857	+		PP_4924	0.70	-2.1
5,601,857	+		PP_4924	0.70	-2.4
5,601,857	+		PP_4924	0.70	+0.7
5,601,857	+		PP_4924	0.70	-2.0
5,601,857	+		PP_4924	0.70	+0.8
5,601,857	+		PP_4924	0.70	+2.8
5,601,858	-		PP_4924	0.70	+0.0
5,601,858	-		PP_4924	0.70	-0.4
5,601,895	+		PP_4924	0.71	+0.4
5,601,961	+		PP_4924	0.72	+1.1
5,601,962	-		PP_4924	0.72	+1.9
5,601,981	+		PP_4924	0.72	+0.6
5,601,982	-		PP_4924	0.72	+1.1
5,601,982	-		PP_4924	0.72	+0.9
5,602,033	+		PP_4924	0.73	+1.2
5,602,066	-		PP_4924	0.74	+0.7
5,602,090	+		PP_4924	0.74	+2.0
5,602,090	+		PP_4924	0.74	+1.4
5,602,090	+		PP_4924	0.74	-0.9
5,602,091	-		PP_4924	0.74	+1.6
5,602,091	-		PP_4924	0.74	-0.4
5,602,091	-		PP_4924	0.74	-1.6
5,602,272	-		PP_4924	0.78	-0.9
5,602,504	+		PP_4924	0.82	-0.6
5,602,504	+		PP_4924	0.82	+1.3
5,602,505	-		PP_4924	0.82	+0.5
5,602,505	-		PP_4924	0.82	+1.1
5,602,553	+		PP_4924	0.83	+2.5
5,602,554	-		PP_4924	0.83	-1.7
5,602,852	-		PP_4924	0.88	+0.5
5,602,890	+		PP_4924	0.89	+0.2
5,602,891	-		PP_4924	0.89	-0.1
5,602,891	-		PP_4924	0.89	-0.9
5,602,969	+				+1.3
5,603,408	+				+1.1
5,603,408	+				-0.6
5,603,428	-				-1.3
5,603,428	-				-1.0
5,603,541	-				+0.6
5,603,629	+		PP_4925	0.19	+1.4
5,603,668	+		PP_4925	0.23	+0.9
5,603,788	-		PP_4925	0.38	+2.1
5,603,812	+		PP_4925	0.41	+1.0
5,603,875	-		PP_4925	0.49	+1.4
5,603,888	+		PP_4925	0.51	-0.4
5,603,909	-		PP_4925	0.53	-0.9
5,603,947	+		PP_4925	0.58	-1.7
5,603,948	-		PP_4925	0.58	+1.2
5,604,266	+				+1.5
5,604,272	+				+0.9
5,604,278	+				+0.5
5,604,460	-				-1.1