Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4818 and PP_4819 are separated by 42 nucleotides PP_4819 and PP_4820 are separated by 207 nucleotides
PP_4818: PP_4818 - ribosomal protein L11 methyltransferase, at 5,479,477 to 5,480,469
_4818
PP_4819: PP_4819 - conserved protein of unknown function, at 5,480,512 to 5,481,867
_4819
PP_4820: PP_4820 - tRNA-dihydrouridine synthase B, at 5,482,075 to 5,483,088
_4820
Position (kb) 5480
5481
5482 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5479.574 kb on + strand at 5479.575 kb on - strand at 5479.575 kb on - strand at 5479.607 kb on + strand, within PP_4818 at 5479.642 kb on + strand, within PP_4818 at 5479.642 kb on + strand, within PP_4818 at 5479.643 kb on - strand, within PP_4818 at 5479.646 kb on + strand, within PP_4818 at 5479.664 kb on + strand, within PP_4818 at 5480.142 kb on - strand, within PP_4818 at 5480.227 kb on + strand, within PP_4818 at 5480.228 kb on - strand, within PP_4818 at 5480.396 kb on - strand at 5480.477 kb on + strand at 5480.478 kb on - strand at 5480.478 kb on - strand at 5480.483 kb on - strand at 5480.624 kb on + strand at 5480.625 kb on - strand at 5480.756 kb on + strand, within PP_4819 at 5480.968 kb on + strand, within PP_4819 at 5480.968 kb on + strand, within PP_4819 at 5480.969 kb on - strand, within PP_4819 at 5480.969 kb on - strand, within PP_4819 at 5480.969 kb on - strand, within PP_4819 at 5481.257 kb on + strand, within PP_4819 at 5481.363 kb on - strand, within PP_4819 at 5481.452 kb on - strand, within PP_4819 at 5481.494 kb on - strand, within PP_4819 at 5481.556 kb on - strand, within PP_4819 at 5481.587 kb on + strand, within PP_4819 at 5481.637 kb on + strand, within PP_4819 at 5481.637 kb on + strand, within PP_4819 at 5481.739 kb on + strand at 5481.739 kb on + strand at 5481.739 kb on + strand at 5481.865 kb on + strand at 5481.959 kb on + strand at 5481.959 kb on + strand at 5481.960 kb on - strand at 5481.960 kb on - strand at 5482.074 kb on + strand at 5482.074 kb on + strand at 5482.074 kb on + strand at 5482.106 kb on + strand at 5482.106 kb on + strand at 5482.106 kb on + strand at 5482.106 kb on + strand at 5482.106 kb on + strand at 5482.110 kb on + strand at 5482.110 kb on + strand at 5482.110 kb on + strand at 5482.110 kb on + strand at 5482.188 kb on + strand, within PP_4820 at 5482.368 kb on + strand, within PP_4820 at 5482.424 kb on + strand, within PP_4820 at 5482.630 kb on + strand, within PP_4820 at 5482.801 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 5,479,574 + +0.7 5,479,575 - -1.2 5,479,575 - +1.0 5,479,607 + PP_4818 0.13 +0.5 5,479,642 + PP_4818 0.17 +0.7 5,479,642 + PP_4818 0.17 +0.2 5,479,643 - PP_4818 0.17 -0.5 5,479,646 + PP_4818 0.17 +2.2 5,479,664 + PP_4818 0.19 +0.2 5,480,142 - PP_4818 0.67 +0.0 5,480,227 + PP_4818 0.76 +0.3 5,480,228 - PP_4818 0.76 -1.4 5,480,396 - +0.2 5,480,477 + -0.4 5,480,478 - +1.1 5,480,478 - -1.4 5,480,483 - -1.6 5,480,624 + +2.1 5,480,625 - -1.0 5,480,756 + PP_4819 0.18 +0.3 5,480,968 + PP_4819 0.34 -1.2 5,480,968 + PP_4819 0.34 -3.9 5,480,969 - PP_4819 0.34 -3.9 5,480,969 - PP_4819 0.34 -3.0 5,480,969 - PP_4819 0.34 -0.4 5,481,257 + PP_4819 0.55 -1.2 5,481,363 - PP_4819 0.63 +0.2 5,481,452 - PP_4819 0.69 -2.1 5,481,494 - PP_4819 0.72 -2.0 5,481,556 - PP_4819 0.77 +0.5 5,481,587 + PP_4819 0.79 -1.6 5,481,637 + PP_4819 0.83 -1.7 5,481,637 + PP_4819 0.83 -2.0 5,481,739 + -0.1 5,481,739 + +0.1 5,481,739 + -2.2 5,481,865 + +0.8 5,481,959 + -2.4 5,481,959 + -0.9 5,481,960 - +2.9 5,481,960 - -0.9 5,482,074 + +0.4 5,482,074 + -2.0 5,482,074 + -0.4 5,482,106 + +0.4 5,482,106 + +1.8 5,482,106 + +1.4 5,482,106 + -0.8 5,482,106 + +0.1 5,482,110 + -0.5 5,482,110 + -1.9 5,482,110 + +0.4 5,482,110 + -0.8 5,482,188 + PP_4820 0.11 -1.6 5,482,368 + PP_4820 0.29 -1.1 5,482,424 + PP_4820 0.34 +0.4 5,482,630 + PP_4820 0.55 -1.4 5,482,801 + -0.5
Or see this region's nucleotide sequence