Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4768 and PP_4769 are separated by 9 nucleotides PP_4769 and PP_4770 are separated by 160 nucleotides PP_4770 and PP_4771 are separated by 167 nucleotides PP_4771 and PP_5713 are separated by 85 nucleotides
PP_4768: PP_4768 - Exonuclease, at 5,429,218 to 5,429,829
_4768
PP_4769: PP_4769 - conserved protein of unknown function, at 5,429,839 to 5,430,318
_4769
PP_4770: PP_4770 - conserved protein of unknown function, at 5,430,479 to 5,431,237
_4770
PP_4771: PP_4771 - conserved membrane protein of unknown function, at 5,431,405 to 5,432,061
_4771
PP_5713: PP_5713 - conserved protein of unknown function, at 5,432,147 to 5,432,665
_5713
Position (kb) 5430
5431
5432 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5429.531 kb on + strand, within PP_4768 at 5429.532 kb on - strand, within PP_4768 at 5429.790 kb on + strand at 5429.791 kb on - strand at 5429.820 kb on + strand at 5429.820 kb on + strand at 5429.820 kb on + strand at 5429.821 kb on - strand at 5429.821 kb on - strand at 5429.840 kb on + strand at 5429.876 kb on + strand at 5429.877 kb on - strand at 5429.927 kb on + strand, within PP_4769 at 5429.927 kb on + strand at 5429.928 kb on - strand, within PP_4769 at 5429.928 kb on - strand, within PP_4769 at 5430.048 kb on + strand, within PP_4769 at 5430.182 kb on + strand, within PP_4769 at 5430.240 kb on - strand, within PP_4769 at 5430.275 kb on + strand at 5430.275 kb on + strand at 5430.276 kb on - strand at 5430.276 kb on - strand at 5430.278 kb on + strand at 5430.278 kb on + strand at 5430.279 kb on - strand at 5430.279 kb on - strand at 5430.279 kb on - strand at 5430.279 kb on - strand at 5430.466 kb on + strand at 5430.466 kb on + strand at 5430.486 kb on + strand at 5430.487 kb on - strand at 5430.487 kb on - strand at 5430.544 kb on - strand at 5430.616 kb on + strand, within PP_4770 at 5430.617 kb on - strand, within PP_4770 at 5430.869 kb on + strand, within PP_4770 at 5430.870 kb on - strand, within PP_4770 at 5430.870 kb on - strand, within PP_4770 at 5431.098 kb on + strand, within PP_4770 at 5431.098 kb on + strand, within PP_4770 at 5431.099 kb on - strand, within PP_4770 at 5431.099 kb on - strand, within PP_4770 at 5431.099 kb on - strand, within PP_4770 at 5431.099 kb on - strand, within PP_4770 at 5431.099 kb on - strand, within PP_4770 at 5431.099 kb on - strand, within PP_4770 at 5431.099 kb on - strand, within PP_4770 at 5431.101 kb on + strand, within PP_4770 at 5431.102 kb on - strand, within PP_4770 at 5431.102 kb on - strand, within PP_4770 at 5431.289 kb on + strand at 5431.289 kb on + strand at 5431.369 kb on + strand at 5431.369 kb on + strand at 5431.370 kb on - strand at 5431.438 kb on + strand at 5431.438 kb on + strand at 5431.439 kb on - strand at 5431.439 kb on - strand at 5431.591 kb on + strand, within PP_4771 at 5431.591 kb on + strand, within PP_4771 at 5431.592 kb on - strand, within PP_4771 at 5431.612 kb on + strand, within PP_4771 at 5431.703 kb on + strand, within PP_4771 at 5431.703 kb on + strand, within PP_4771 at 5431.792 kb on + strand, within PP_4771 at 5431.889 kb on + strand, within PP_4771 at 5432.130 kb on + strand at 5432.130 kb on + strand at 5432.131 kb on - strand at 5432.198 kb on + strand at 5432.198 kb on + strand at 5432.198 kb on + strand at 5432.199 kb on - strand, within PP_5713 at 5432.199 kb on - strand, within PP_5713 at 5432.199 kb on - strand, within PP_5713
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 5,429,531 + PP_4768 0.51 +1.2 5,429,532 - PP_4768 0.51 -1.1 5,429,790 + -2.1 5,429,791 - -1.0 5,429,820 + +0.2 5,429,820 + +1.5 5,429,820 + -3.6 5,429,821 - +1.5 5,429,821 - +0.8 5,429,840 + -0.1 5,429,876 + +0.3 5,429,877 - +2.4 5,429,927 + PP_4769 0.18 -0.8 5,429,927 + +2.4 5,429,928 - PP_4769 0.19 -0.1 5,429,928 - PP_4769 0.19 -2.2 5,430,048 + PP_4769 0.44 -0.8 5,430,182 + PP_4769 0.71 +1.8 5,430,240 - PP_4769 0.84 +1.2 5,430,275 + +1.4 5,430,275 + -2.0 5,430,276 - -1.0 5,430,276 - +0.6 5,430,278 + -0.3 5,430,278 + +0.6 5,430,279 - +0.8 5,430,279 - -0.9 5,430,279 - +0.4 5,430,279 - -1.2 5,430,466 + -0.7 5,430,466 + -1.2 5,430,486 + -2.2 5,430,487 - -1.6 5,430,487 - -0.9 5,430,544 - -0.4 5,430,616 + PP_4770 0.18 -1.3 5,430,617 - PP_4770 0.18 -0.3 5,430,869 + PP_4770 0.51 -1.5 5,430,870 - PP_4770 0.52 -0.7 5,430,870 - PP_4770 0.52 -0.4 5,431,098 + PP_4770 0.82 -2.8 5,431,098 + PP_4770 0.82 +1.0 5,431,099 - PP_4770 0.82 -1.1 5,431,099 - PP_4770 0.82 +0.1 5,431,099 - PP_4770 0.82 -0.6 5,431,099 - PP_4770 0.82 -3.1 5,431,099 - PP_4770 0.82 -2.7 5,431,099 - PP_4770 0.82 +0.9 5,431,099 - PP_4770 0.82 -0.1 5,431,101 + PP_4770 0.82 -0.4 5,431,102 - PP_4770 0.82 -0.8 5,431,102 - PP_4770 0.82 -1.3 5,431,289 + +1.8 5,431,289 + +0.5 5,431,369 + -2.2 5,431,369 + +0.2 5,431,370 - +1.9 5,431,438 + -1.3 5,431,438 + +1.6 5,431,439 - -0.2 5,431,439 - -0.0 5,431,591 + PP_4771 0.28 +1.9 5,431,591 + PP_4771 0.28 +1.8 5,431,592 - PP_4771 0.28 -0.3 5,431,612 + PP_4771 0.32 +0.4 5,431,703 + PP_4771 0.45 -0.6 5,431,703 + PP_4771 0.45 -1.1 5,431,792 + PP_4771 0.59 +0.4 5,431,889 + PP_4771 0.74 +0.4 5,432,130 + -3.0 5,432,130 + -2.2 5,432,131 - -0.3 5,432,198 + +0.9 5,432,198 + +2.0 5,432,198 + +1.7 5,432,199 - PP_5713 0.10 +0.5 5,432,199 - PP_5713 0.10 +0.4 5,432,199 - PP_5713 0.10 +0.2
Or see this region's nucleotide sequence