Strain Fitness in Pseudomonas putida KT2440 around PP_4456

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
5,055,494	+		PP_4455	0.12	-0.9
5,055,494	+		PP_4455	0.12	-0.2
5,055,494	+		PP_4455	0.12	+0.6
5,055,494	+		PP_4455	0.12	-0.8
5,055,495	-		PP_4455	0.12	+0.1
5,055,495	-		PP_4455	0.12	-2.2
5,055,594	-		PP_4455	0.22	-0.0
5,055,601	+		PP_4455	0.23	+0.3
5,055,601	+		PP_4455	0.23	+0.7
5,055,602	-		PP_4455	0.23	-2.8
5,055,602	-		PP_4455	0.23	+0.3
5,055,604	+		PP_4455	0.23	-2.9
5,055,605	-		PP_4455	0.23	+0.4
5,055,605	-		PP_4455	0.23	+0.3
5,055,605	-		PP_4455	0.23	+0.4
5,055,630	+		PP_4455	0.26	+0.9
5,055,630	+		PP_4455	0.26	-1.9
5,055,631	-		PP_4455	0.26	-1.5
5,055,660	+		PP_4455	0.29	-2.9
5,055,660	+		PP_4455	0.29	+0.9
5,055,660	+		PP_4455	0.29	+0.1
5,055,695	+		PP_4455	0.33	+2.4
5,055,696	-		PP_4455	0.33	-0.0
5,055,696	-		PP_4455	0.33	+1.1
5,055,696	-		PP_4455	0.33	-0.4
5,055,746	+		PP_4455	0.38	+1.4
5,055,746	+		PP_4455	0.38	-2.9
5,055,746	+		PP_4455	0.38	+0.9
5,055,746	+		PP_4455	0.38	-1.5
5,055,746	+		PP_4455	0.38	-2.4
5,055,746	+		PP_4455	0.38	-1.0
5,055,746	+		PP_4455	0.38	+1.1
5,055,747	-		PP_4455	0.38	-2.9
5,055,747	-		PP_4455	0.38	-0.6
5,055,747	-		PP_4455	0.38	+2.2
5,055,747	-		PP_4455	0.38	+1.7
5,055,938	+		PP_4455	0.59	+1.3
5,055,939	-		PP_4455	0.59	+0.3
5,055,939	-		PP_4455	0.59	-1.5
5,056,043	-		PP_4455	0.70	-0.3
5,056,043	-		PP_4455	0.70	-1.0
5,056,054	+		PP_4455	0.71	-0.1
5,056,054	+		PP_4455	0.71	-0.3
5,056,131	+		PP_4455	0.79	+1.0
5,056,131	+		PP_4455	0.79	+0.2
5,056,131	+		PP_4455	0.79	-1.4
5,056,131	+		PP_4455	0.79	+1.3
5,056,131	+		PP_4455	0.79	-3.3
5,056,132	-		PP_4455	0.79	-0.4
5,056,132	-		PP_4455	0.79	-2.7
5,056,132	-		PP_4455	0.79	+0.3
5,056,132	-		PP_4455	0.79	-0.1
5,056,133	+		PP_4455	0.79	+1.4
5,056,133	+		PP_4455	0.79	+0.8
5,056,133	+		PP_4455	0.79	-0.7
5,056,133	+		PP_4455	0.79	-3.5
5,056,133	+		PP_4455	0.79	+1.4
5,056,133	+		PP_4455	0.79	+0.3
5,056,133	+		PP_4455	0.79	+0.6
5,056,133	+		PP_4455	0.79	-0.3
5,056,133	+		PP_4455	0.79	+1.2
5,056,133	+		PP_4455	0.79	+1.2
5,056,133	+		PP_4455	0.79	-1.4
5,056,133	+		PP_4455	0.79	-1.4
5,056,134	-		PP_4455	0.80	-0.1
5,056,134	-		PP_4455	0.80	-2.2
5,056,134	-		PP_4455	0.80	-0.8
5,056,134	-		PP_4455	0.80	-0.0
5,056,134	-		PP_4455	0.80	+1.1
5,056,134	-		PP_4455	0.80	-2.1
5,056,134	-		PP_4455	0.80	-0.7
5,056,157	-		PP_4455	0.82	+1.3
5,056,157	-		PP_4455	0.82	+0.9
5,056,252	+				-3.1
5,056,253	-				-3.5
5,056,309	-				+1.0
5,056,389	-				-1.0
5,056,389	-				+1.0
5,056,389	-				-0.6
5,056,400	+				-1.4
5,056,400	+				+0.5
5,056,401	-				-2.1
5,056,401	-				-1.9
5,056,445	+				-0.6
5,056,445	+				-1.4
5,056,458	+				-0.1
5,056,458	+				-1.1
5,056,499	+				-0.4
5,056,499	+				-0.6
5,056,500	-				-1.4
5,056,587	+				-0.1
5,056,588	-				-0.9
5,056,588	-				+0.6
5,056,618	+		PP_4456	0.12	-0.1
5,056,619	-		PP_4456	0.12	-2.5
5,056,619	-		PP_4456	0.12	-1.1
5,056,631	-		PP_4456	0.12	-0.9
5,056,639	+		PP_4456	0.13	+0.9
5,056,640	-		PP_4456	0.13	-0.6
5,056,664	+		PP_4456	0.15	+1.7
5,056,664	+		PP_4456	0.15	-0.9
5,056,740	+				+0.5
5,056,740	+		PP_4456	0.20	-2.3
5,056,740	+		PP_4456	0.20	+0.7
5,056,741	-		PP_4456	0.20	+0.3
5,056,741	-		PP_4456	0.20	+1.4
5,056,741	-		PP_4456	0.20	+0.6
5,056,761	+		PP_4456	0.22	-0.1
5,056,762	-		PP_4456	0.22	-0.7
5,056,762	-		PP_4456	0.22	+0.2
5,056,762	-		PP_4456	0.22	+0.7
5,056,762	-		PP_4456	0.22	-1.0
5,056,762	-		PP_4456	0.22	+1.7
5,056,790	+		PP_4456	0.24	-0.2
5,056,790	+		PP_4456	0.24	-0.9
5,056,790	+		PP_4456	0.24	-2.4
5,056,790	+		PP_4456	0.24	+0.3
5,056,791	-		PP_4456	0.24	-0.9
5,056,791	-		PP_4456	0.24	+0.9
5,056,852	+		PP_4456	0.28	-2.5
5,056,852	+		PP_4456	0.28	-0.5
5,056,853	-		PP_4456	0.28	+1.6
5,056,867	+		PP_4456	0.29	-2.4
5,057,044	+		PP_4456	0.42	-1.2
5,057,045	-		PP_4456	0.42	+1.2
5,057,053	+		PP_4456	0.43	-0.5
5,057,053	+		PP_4456	0.43	-1.1
5,057,054	-		PP_4456	0.43	-0.6
5,057,081	+		PP_4456	0.45	+0.1
5,057,081	+		PP_4456	0.45	+0.4
5,057,082	-		PP_4456	0.45	-1.9
5,057,082	-		PP_4456	0.45	-0.5
5,057,305	+		PP_4456	0.61	-2.7
5,057,305	+		PP_4456	0.61	+1.2
5,057,305	+		PP_4456	0.61	+1.3
5,057,305	+		PP_4456	0.61	-2.2
5,057,306	-		PP_4456	0.61	-0.8
5,057,308	+		PP_4456	0.61	-0.1
5,057,308	+		PP_4456	0.61	-0.5
5,057,309	-		PP_4456	0.61	-0.4
5,057,344	+		PP_4456	0.64	-1.0
5,057,345	-		PP_4456	0.64	-1.5
5,057,358	+		PP_4456	0.65	-0.1
5,057,358	+		PP_4456	0.65	-3.0
5,057,358	+		PP_4456	0.65	+0.7
5,057,358	+		PP_4456	0.65	-1.7
5,057,358	+		PP_4456	0.65	-0.9
5,057,359	-		PP_4456	0.65	-0.8
5,057,359	-		PP_4456	0.65	-2.4
5,057,359	-		PP_4456	0.65	-0.6
5,057,359	-		PP_4456	0.65	+0.9
5,057,359	-		PP_4456	0.65	-0.3
5,057,447	+		PP_4456	0.71	-0.8
5,057,447	+		PP_4456	0.71	-0.3
5,057,447	+		PP_4456	0.71	-2.3
5,057,448	-		PP_4456	0.71	+0.9
5,057,448	-		PP_4456	0.71	-2.3
5,057,448	-		PP_4456	0.71	+2.0
5,057,510	-		PP_4456	0.75	-0.1
5,057,546	+		PP_4456	0.78	-1.5
5,057,546	+		PP_4456	0.78	-1.3
5,057,547	-		PP_4456	0.78	-0.2
5,057,547	-				+1.3
5,057,547	-		PP_4456	0.78	+0.0
5,057,547	-		PP_4456	0.78	-1.5
5,057,554	+		PP_4456	0.79	-0.3
5,057,554	+		PP_4456	0.79	-0.1
5,057,554	+		PP_4456	0.79	+0.3
5,057,554	+		PP_4456	0.79	-2.3
5,057,555	-		PP_4456	0.79	-0.6
5,057,555	-		PP_4456	0.79	+0.5
5,057,555	-		PP_4456	0.79	+0.1
5,057,555	-		PP_4456	0.79	+0.7
5,057,555	-		PP_4456	0.79	+0.6
5,057,613	+		PP_4456	0.83	-0.2
5,057,613	+		PP_4456	0.83	-0.9
5,057,642	+		PP_4456	0.85	-2.1
5,057,643	-		PP_4456	0.85	-0.8
5,057,664	+		PP_4456	0.87	-0.0
5,057,665	-		PP_4456	0.87	-0.9
5,057,711	+		PP_4456	0.90	+0.6
5,057,712	-				-1.8
5,057,857	+				+0.1
5,057,857	+				-1.1
5,057,857	+				+0.5
5,057,857	+				+0.7
5,057,858	-				+0.3
5,057,858	-				+0.4
5,057,858	-				-1.5
5,057,873	+		PP_5688	0.11	-0.9
5,057,873	+		PP_5688	0.11	+1.3
5,057,911	+		PP_5688	0.27	-2.7
5,057,912	-		PP_5688	0.28	+0.4
5,057,912	-		PP_5688	0.28	-1.2
5,057,945	-		PP_5688	0.42	+0.6
5,057,981	+		PP_5688	0.58	-0.6
5,057,982	-		PP_5688	0.58	+0.5
5,057,982	-		PP_5688	0.58	+0.9
5,057,982	-		PP_5688	0.58	-0.3
5,057,982	-		PP_5688	0.58	-0.8
5,057,982	-		PP_5688	0.58	-0.7
5,058,086	-				+0.1
5,058,086	-				+0.5
5,058,099	-				-1.9
5,058,099	-				-0.0
5,058,211	-				-0.4
5,058,294	+		PP_4457	0.15	+0.7
5,058,294	+		PP_4457	0.15	+0.5
5,058,295	-		PP_4457	0.15	+2.5
5,058,295	-		PP_4457	0.15	-1.0
5,058,295	-		PP_4457	0.15	-0.4
5,058,347	+		PP_4457	0.20	-0.5
5,058,348	-				+2.3
5,058,348	-		PP_4457	0.20	+1.4
5,058,389	-		PP_4457	0.23	+0.1
5,058,389	-		PP_4457	0.23	-2.5
5,058,395	-		PP_4457	0.24	+0.3
5,058,437	+		PP_4457	0.28	-1.2
5,058,437	+		PP_4457	0.28	-1.9
5,058,437	+		PP_4457	0.28	-0.0
5,058,438	-		PP_4457	0.28	-3.3
5,058,533	-		PP_4457	0.36	-1.4
5,058,605	+		PP_4457	0.43	-0.4
5,058,606	-		PP_4457	0.43	+1.3
5,058,606	-		PP_4457	0.43	+1.0
5,058,681	-		PP_4457	0.49	+2.1
5,058,689	+		PP_4457	0.50	+1.5
5,058,689	+		PP_4457	0.50	+0.4
5,058,689	+		PP_4457	0.50	+0.1
5,058,689	+		PP_4457	0.50	-2.1
5,058,690	-		PP_4457	0.50	-0.6
5,058,690	-		PP_4457	0.50	-1.2
5,058,690	-		PP_4457	0.50	-2.8
5,058,690	-		PP_4457	0.50	+0.4
5,058,690	-		PP_4457	0.50	-1.1
5,058,690	-		PP_4457	0.50	-1.0
5,058,690	-		PP_4457	0.50	+0.4