Strain Fitness in Pseudomonas putida KT2440 around PP_1953

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
2,208,773	+				-2.2
2,209,002	-		PP_1952	0.33	-1.3
2,209,077	-		PP_1952	0.41	+0.2
2,209,084	-		PP_1952	0.42	-1.6
2,209,184	-		PP_1952	0.53	+0.5
2,209,184	-		PP_1952	0.53	-1.3
2,209,200	+		PP_1952	0.54	-0.6
2,209,256	+		PP_1952	0.60	-2.4
2,209,256	+		PP_1952	0.60	-1.9
2,209,256	+		PP_1952	0.60	-0.8
2,209,257	-		PP_1952	0.60	+1.8
2,209,257	-		PP_1952	0.60	+0.5
2,209,257	-		PP_1952	0.60	+0.4
2,209,257	-		PP_1952	0.60	-0.9
2,209,257	-		PP_1952	0.60	-2.7
2,209,257	-		PP_1952	0.60	-0.9
2,209,264	+		PP_1952	0.61	+0.7
2,209,265	-		PP_1952	0.61	+0.9
2,209,265	-		PP_1952	0.61	+0.1
2,209,270	-		PP_1952	0.62	+0.2
2,209,361	-		PP_1952	0.71	-0.5
2,209,361	-		PP_1952	0.71	-0.1
2,209,361	-		PP_1952	0.71	-1.0
2,209,364	+		PP_1952	0.72	-1.0
2,209,364	+		PP_1952	0.72	-0.7
2,209,365	-		PP_1952	0.72	+0.5
2,209,365	-		PP_1952	0.72	+0.6
2,209,365	-		PP_1952	0.72	-2.3
2,209,365	-		PP_1952	0.72	+0.2
2,209,385	+		PP_1952	0.74	-0.5
2,209,385	+		PP_1952	0.74	-0.1
2,209,385	+		PP_1952	0.74	-3.0
2,209,385	+		PP_1952	0.74	-0.9
2,209,385	+		PP_1952	0.74	-1.6
2,209,386	-		PP_1952	0.74	-0.3
2,209,430	+		PP_1952	0.79	+0.1
2,209,430	+		PP_1952	0.79	-2.1
2,209,430	+		PP_1952	0.79	-2.2
2,209,430	+		PP_1952	0.79	-1.3
2,209,431	-		PP_1952	0.79	-1.3
2,209,431	-		PP_1952	0.79	-0.3
2,209,456	+		PP_1952	0.81	-0.2
2,209,456	+		PP_1952	0.81	+1.8
2,209,456	+		PP_1952	0.81	-1.3
2,209,457	-		PP_1952	0.81	+0.9
2,209,457	-		PP_1952	0.81	+0.4
2,209,457	-		PP_1952	0.81	-2.3
2,209,457	-		PP_1952	0.81	-1.4
2,209,457	-		PP_1952	0.81	-2.8
2,209,457	-		PP_1952	0.81	+1.6
2,209,457	-		PP_1952	0.81	+0.9
2,209,457	-		PP_1952	0.81	+0.3
2,209,457	-		PP_1952	0.81	-1.0
2,209,457	-		PP_1952	0.81	-1.5
2,209,481	+		PP_1952	0.84	+0.7
2,209,497	+		PP_1952	0.86	+1.2
2,209,498	-		PP_1952	0.86	-1.1
2,209,541	-				+0.6
2,209,541	-				-1.9
2,209,562	+				+0.2
2,209,617	+				-0.1
2,209,621	+				+0.8
2,209,622	-				-0.6
2,209,738	-				+0.7
2,209,738	-				+0.5
2,209,829	+				-2.6
2,209,829	+				+0.7
2,209,829	+				+1.2
2,209,830	-				+1.0
2,209,830	-				-0.1
2,209,866	+		PP_1953	0.14	+0.8
2,209,866	+		PP_1953	0.14	+1.2
2,209,867	-		PP_1953	0.14	-0.4
2,210,001	+		PP_1953	0.30	+0.1
2,210,002	-		PP_1953	0.30	+0.3
2,210,002	-		PP_1953	0.30	-1.1
2,210,002	-		PP_1953	0.30	+0.1
2,210,124	+		PP_1953	0.45	-1.2
2,210,124	+		PP_1953	0.45	+1.4
2,210,281	+		PP_1953	0.65	-0.1
2,210,281	+		PP_1953	0.65	-0.7
2,210,281	+		PP_1953	0.65	+0.0
2,210,282	-		PP_1953	0.65	-0.2
2,210,282	-		PP_1953	0.65	+0.5
2,210,282	-		PP_1953	0.65	-0.5
2,210,282	-		PP_1953	0.65	-0.8
2,210,285	-		PP_1953	0.65	-0.1
2,210,347	+		PP_1953	0.73	-2.3
2,210,348	-		PP_1953	0.73	+0.4
2,210,348	-		PP_1953	0.73	-0.2
2,210,348	-		PP_1953	0.73	+2.1
2,210,348	-		PP_1953	0.73	+0.6
2,210,348	-		PP_1953	0.73	-2.4
2,210,348	-		PP_1953	0.73	+0.8
2,210,348	-		PP_1953	0.73	-2.4
2,210,563	+				-1.9
2,210,564	-				+0.6
2,210,564	-				-1.8
2,210,564	-				-0.1
2,210,564	-				+0.7
2,210,564	-				-2.1
2,210,585	+				-0.0
2,210,585	+				-1.4
2,210,585	+				-2.1
2,210,586	-				+0.8
2,210,586	-				-0.9
2,210,587	+				+0.8
2,210,587	+				+2.0
2,210,587	+				-1.3
2,210,587	+				-1.2
2,210,595	+				+1.6
2,210,595	+				-1.1
2,210,596	-				+0.2
2,210,596	-				-1.9
2,210,615	+				-0.5
2,210,691	+				-0.9
2,210,691	+				-0.1
2,210,692	-				-0.3
2,210,692	-				-0.6
2,210,692	-				-2.8
2,210,692	-				+0.7
2,210,866	+		PP_1954	0.22	+1.4
2,210,866	+		PP_1954	0.22	+0.2
2,210,867	-		PP_1954	0.22	+0.3
2,210,867	-		PP_1954	0.22	+1.0
2,210,867	-		PP_1954	0.22	-2.9
2,210,867	-		PP_1954	0.22	-1.4
2,210,879	+		PP_1954	0.23	+0.3
2,210,896	+		PP_1954	0.25	-0.6
2,210,896	+		PP_1954	0.25	-0.6
2,210,896	+		PP_1954	0.25	+0.2
2,210,897	-		PP_1954	0.25	-0.5
2,210,897	-		PP_1954	0.25	+1.4
2,210,897	-		PP_1954	0.25	-1.5
2,211,067	+				+0.5
2,211,068	-		PP_1954	0.39	-1.0
2,211,092	+		PP_1954	0.41	-3.6
2,211,092	+		PP_1954	0.41	+1.1
2,211,093	-		PP_1954	0.41	-0.2
2,211,093	-		PP_1954	0.41	+0.3
2,211,124	+		PP_1954	0.44	-0.4
2,211,124	+		PP_1954	0.44	+0.8
2,211,124	+		PP_1954	0.44	+0.7
2,211,124	+		PP_1954	0.44	-0.3
2,211,125	-		PP_1954	0.44	-0.7
2,211,125	-		PP_1954	0.44	-0.0
2,211,125	-		PP_1954	0.44	-0.7
2,211,203	+		PP_1954	0.51	+2.3
2,211,203	+		PP_1954	0.51	-0.5
2,211,291	-		PP_1954	0.58	-0.3
2,211,291	-		PP_1954	0.58	-1.1
2,211,382	+		PP_1954	0.66	+0.0
2,211,382	+		PP_1954	0.66	-2.5
2,211,382	+		PP_1954	0.66	-1.2
2,211,382	+		PP_1954	0.66	+0.6
2,211,382	+		PP_1954	0.66	-0.8
2,211,382	+		PP_1954	0.66	-0.3
2,211,383	-		PP_1954	0.66	+0.4
2,211,383	-		PP_1954	0.66	+0.4
2,211,451	+		PP_1954	0.72	-1.8
2,211,464	+		PP_1954	0.73	-0.2
2,211,464	+		PP_1954	0.73	-0.3
2,211,465	-		PP_1954	0.73	-0.2
2,211,465	-		PP_1954	0.73	-1.2
2,211,472	+		PP_1954	0.74	-0.2
2,211,472	+		PP_1954	0.74	+0.2
2,211,473	-		PP_1954	0.74	-1.5
2,211,473	-		PP_1954	0.74	+0.1
2,211,501	+				+1.0
2,211,511	+		PP_1954	0.77	+1.5
2,211,511	+		PP_1954	0.77	-3.2
2,211,512	-		PP_1954	0.77	-2.4
2,211,512	-		PP_1954	0.77	+0.2
2,211,512	-		PP_1954	0.77	+0.5