Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5454 and PP_0656 are separated by 61 nucleotides PP_0656 and PP_0657 overlap by 4 nucleotides PP_0657 and PP_0658 are separated by 61 nucleotides
PP_5454: PP_5454 - conserved membrane protein of unknown function, at 763,278 to 763,637
_5454
PP_0656: PP_0656 - putative Amino acid ABC transporter, permease protein, at 763,699 to 764,520
_0656
PP_0657: PP_0657 - putative Amino acid ABC transporter, periplasmic amino acid-binding protein, at 764,517 to 765,344
_0657
PP_0658: PP_0658 - Homocysteine S-methyltransferase family protein, at 765,406 to 766,341
_0658
Position (kb) 764
765
766 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 763.630 kb on - strand at 763.630 kb on - strand at 763.709 kb on + strand at 763.709 kb on + strand at 763.709 kb on + strand at 763.709 kb on + strand at 763.710 kb on - strand at 763.775 kb on + strand at 763.775 kb on + strand at 763.775 kb on + strand at 763.776 kb on - strand at 763.776 kb on - strand at 763.776 kb on - strand at 763.808 kb on + strand, within PP_0656 at 763.814 kb on + strand, within PP_0656 at 763.814 kb on + strand, within PP_0656 at 764.058 kb on - strand, within PP_0656 at 764.066 kb on + strand, within PP_0656 at 764.067 kb on - strand, within PP_0656 at 764.138 kb on + strand, within PP_0656 at 764.139 kb on - strand, within PP_0656 at 764.139 kb on - strand, within PP_0656 at 764.189 kb on + strand, within PP_0656 at 764.189 kb on + strand at 764.190 kb on - strand, within PP_0656 at 764.190 kb on - strand, within PP_0656 at 764.266 kb on + strand, within PP_0656 at 764.527 kb on - strand at 764.601 kb on + strand, within PP_0657 at 764.601 kb on + strand, within PP_0657 at 764.660 kb on - strand, within PP_0657 at 764.729 kb on + strand, within PP_0657 at 764.730 kb on - strand, within PP_0657 at 764.797 kb on + strand, within PP_0657 at 764.798 kb on - strand, within PP_0657 at 764.878 kb on + strand, within PP_0657 at 764.879 kb on - strand, within PP_0657 at 764.887 kb on + strand, within PP_0657 at 764.989 kb on + strand, within PP_0657 at 764.993 kb on - strand, within PP_0657 at 764.993 kb on - strand, within PP_0657 at 765.303 kb on + strand at 765.303 kb on + strand at 765.304 kb on - strand at 765.304 kb on - strand at 765.340 kb on + strand at 765.340 kb on + strand at 765.340 kb on + strand at 765.340 kb on + strand at 765.340 kb on + strand at 765.340 kb on + strand at 765.341 kb on - strand at 765.341 kb on - strand at 765.341 kb on - strand at 765.344 kb on + strand at 765.345 kb on - strand at 765.345 kb on - strand at 765.345 kb on - strand at 765.351 kb on + strand at 765.352 kb on - strand at 765.376 kb on + strand at 765.381 kb on - strand at 765.383 kb on + strand at 765.384 kb on - strand at 765.404 kb on + strand at 765.440 kb on - strand at 765.441 kb on + strand at 765.441 kb on + strand at 765.441 kb on + strand at 765.442 kb on - strand at 765.462 kb on - strand at 765.622 kb on + strand, within PP_0658 at 765.622 kb on + strand, within PP_0658 at 765.622 kb on + strand, within PP_0658 at 765.622 kb on + strand, within PP_0658 at 765.622 kb on + strand, within PP_0658 at 765.622 kb on + strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.629 kb on + strand, within PP_0658 at 765.629 kb on + strand, within PP_0658 at 765.720 kb on + strand, within PP_0658 at 765.721 kb on - strand, within PP_0658 at 766.056 kb on + strand, within PP_0658 at 766.056 kb on + strand, within PP_0658 at 766.057 kb on - strand, within PP_0658 at 766.057 kb on - strand, within PP_0658
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 763,630 - -1.7 763,630 - +0.0 763,709 + -1.2 763,709 + +0.5 763,709 + -0.7 763,709 + -1.5 763,710 - +0.2 763,775 + -3.1 763,775 + -1.5 763,775 + +1.8 763,776 - +0.8 763,776 - -1.4 763,776 - -0.3 763,808 + PP_0656 0.13 +2.4 763,814 + PP_0656 0.14 -2.7 763,814 + PP_0656 0.14 +0.7 764,058 - PP_0656 0.44 -0.8 764,066 + PP_0656 0.45 +0.6 764,067 - PP_0656 0.45 -3.1 764,138 + PP_0656 0.53 -2.9 764,139 - PP_0656 0.54 +0.5 764,139 - PP_0656 0.54 -3.2 764,189 + PP_0656 0.60 -1.8 764,189 + +1.7 764,190 - PP_0656 0.60 -0.6 764,190 - PP_0656 0.60 +1.2 764,266 + PP_0656 0.69 -2.7 764,527 - -0.5 764,601 + PP_0657 0.10 +1.0 764,601 + PP_0657 0.10 +0.3 764,660 - PP_0657 0.17 +0.7 764,729 + PP_0657 0.26 -0.1 764,730 - PP_0657 0.26 -0.0 764,797 + PP_0657 0.34 +0.9 764,798 - PP_0657 0.34 -2.1 764,878 + PP_0657 0.44 +0.8 764,879 - PP_0657 0.44 +0.9 764,887 + PP_0657 0.45 +0.2 764,989 + PP_0657 0.57 -1.7 764,993 - PP_0657 0.57 +0.2 764,993 - PP_0657 0.57 -0.4 765,303 + -0.0 765,303 + +1.3 765,304 - +0.3 765,304 - -0.6 765,340 + +0.8 765,340 + +1.4 765,340 + -0.5 765,340 + +1.6 765,340 + -0.8 765,340 + -0.0 765,341 - -1.7 765,341 - -0.6 765,341 - +0.7 765,344 + -0.4 765,345 - +1.4 765,345 - +0.4 765,345 - +0.1 765,351 + +0.3 765,352 - +0.1 765,376 + +0.6 765,381 - -1.0 765,383 + +1.0 765,384 - -2.7 765,404 + +0.6 765,440 - -1.9 765,441 + -1.3 765,441 + -0.0 765,441 + +0.5 765,442 - +1.1 765,462 - +1.2 765,622 + PP_0658 0.23 +1.3 765,622 + PP_0658 0.23 +1.1 765,622 + PP_0658 0.23 -2.6 765,622 + PP_0658 0.23 -2.5 765,622 + PP_0658 0.23 -1.2 765,622 + PP_0658 0.23 -0.3 765,623 - PP_0658 0.23 +1.2 765,623 - PP_0658 0.23 -0.4 765,623 - PP_0658 0.23 +0.5 765,623 - PP_0658 0.23 +0.7 765,623 - PP_0658 0.23 +1.7 765,623 - PP_0658 0.23 +0.2 765,623 - PP_0658 0.23 +0.3 765,623 - PP_0658 0.23 -0.1 765,623 - PP_0658 0.23 -0.5 765,623 - PP_0658 0.23 +0.8 765,623 - PP_0658 0.23 -0.4 765,623 - PP_0658 0.23 +1.0 765,623 - PP_0658 0.23 -1.6 765,629 + PP_0658 0.24 -3.0 765,629 + PP_0658 0.24 -1.3 765,720 + PP_0658 0.34 +0.6 765,721 - PP_0658 0.34 -0.3 766,056 + PP_0658 0.69 -3.1 766,056 + PP_0658 0.69 +1.2 766,057 - PP_0658 0.70 +1.7 766,057 - PP_0658 0.70 -0.4
Or see this region's nucleotide sequence