Strain Fitness in Escherichia coli BW25113 around b1910

Experiment: Δdbn_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyecA and leuZ are separated by 195 nucleotidesleuZ and cysT are separated by 12 nucleotidescysT and glyW are separated by 54 nucleotidesglyW and pgsA are separated by 151 nucleotidespgsA and uvrC are separated by 56 nucleotides b1908: yecA - conserved metal-binding protein (NCBI), at 1,988,978 to 1,989,643 yecA b1909: leuZ - tRNA-Leu (NCBI), at 1,989,839 to 1,989,925 leuZ b1910: cysT - tRNA-Cys (NCBI), at 1,989,938 to 1,990,011 cysT b1911: glyW - tRNA-Gly (NCBI), at 1,990,066 to 1,990,141 glyW b1912: pgsA - phosphatidylglycerophosphate synthetase (NCBI), at 1,990,293 to 1,990,841 pgsA b1913: uvrC - excinuclease ABC, subunit C; repair of UV damage to DNA (VIMSS), at 1,990,898 to 1,992,730 uvrC Position (kb) 1989 1990 1991Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1988.957 kb on - strandat 1989.096 kb on + strand, within yecAat 1989.154 kb on - strand, within yecAat 1989.198 kb on + strand, within yecAat 1989.216 kb on - strand, within yecAat 1989.216 kb on - strand, within yecAat 1989.265 kb on + strand, within yecAat 1989.348 kb on + strand, within yecAat 1989.348 kb on + strand, within yecAat 1989.454 kb on + strand, within yecAat 1990.916 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Δdbn_10
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1,988,957 - +0.9
1,989,096 + yecA b1908 0.18 -2.2
1,989,154 - yecA b1908 0.26 -0.4
1,989,198 + yecA b1908 0.33 -1.0
1,989,216 - yecA b1908 0.36 +1.0
1,989,216 - yecA b1908 0.36 -3.3
1,989,265 + yecA b1908 0.43 -1.7
1,989,348 + yecA b1908 0.56 -2.3
1,989,348 + yecA b1908 0.56 -0.6
1,989,454 + yecA b1908 0.71 -0.9
1,990,916 + +2.2

Or see this region's nucleotide sequence