Strain Fitness in Escherichia coli BW25113 around b4029

Experiment: Δdbn_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyjbF and yjbG overlap by 4 nucleotidesyjbG and yjbH overlap by 1 nucleotidesyjbH and yjbT are separated by 46 nucleotidesyjbT and yjbA are separated by 269 nucleotides b4027: yjbF - orf, hypothetical protein (VIMSS), at 4,234,285 to 4,234,923 yjbF b4028: yjbG - hypothetical protein (NCBI), at 4,234,920 to 4,235,657 yjbG b4029: yjbH - predicted porin (NCBI), at 4,235,657 to 4,237,753 yjbH b4620: yjbT - hypothetical protein, no homologs (RefSeq), at 4,237,800 to 4,238,078 yjbT b4030: yjbA - phosphate-starvation-inducible protein PsiE (NCBI), at 4,238,348 to 4,238,758 yjbA Position (kb) 4235 4236 4237 4238Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 4234.668 kb on + strand, within yjbFat 4234.668 kb on + strand, within yjbFat 4234.676 kb on - strand, within yjbFat 4234.676 kb on - strand, within yjbFat 4234.698 kb on - strand, within yjbFat 4234.698 kb on - strand, within yjbFat 4234.722 kb on - strand, within yjbFat 4234.821 kb on + strand, within yjbFat 4234.829 kb on - strand, within yjbFat 4235.042 kb on + strand, within yjbGat 4235.053 kb on + strand, within yjbGat 4235.053 kb on + strand, within yjbGat 4235.072 kb on - strand, within yjbGat 4235.147 kb on + strand, within yjbGat 4235.164 kb on + strand, within yjbGat 4235.164 kb on + strand, within yjbGat 4235.252 kb on - strand, within yjbGat 4235.341 kb on + strand, within yjbGat 4235.374 kb on - strand, within yjbGat 4235.391 kb on - strand, within yjbGat 4235.397 kb on - strand, within yjbGat 4235.424 kb on - strand, within yjbGat 4235.544 kb on - strand, within yjbGat 4235.591 kb on + strandat 4235.591 kb on + strandat 4235.607 kb on + strandat 4235.607 kb on + strandat 4235.899 kb on - strand, within yjbHat 4236.051 kb on + strand, within yjbHat 4236.051 kb on + strand, within yjbHat 4236.051 kb on + strand, within yjbHat 4236.051 kb on + strand, within yjbHat 4236.056 kb on + strand, within yjbHat 4236.069 kb on - strand, within yjbHat 4236.083 kb on - strand, within yjbHat 4236.100 kb on - strand, within yjbHat 4236.108 kb on + strand, within yjbHat 4236.260 kb on - strand, within yjbHat 4236.263 kb on + strand, within yjbHat 4236.417 kb on + strand, within yjbHat 4236.447 kb on - strand, within yjbHat 4236.505 kb on - strand, within yjbHat 4236.505 kb on - strand, within yjbHat 4236.571 kb on - strand, within yjbHat 4236.605 kb on - strand, within yjbHat 4236.669 kb on + strand, within yjbHat 4236.672 kb on - strand, within yjbHat 4236.906 kb on - strand, within yjbHat 4236.944 kb on + strand, within yjbHat 4236.944 kb on + strand, within yjbHat 4236.992 kb on - strand, within yjbHat 4236.992 kb on - strand, within yjbHat 4237.034 kb on + strand, within yjbHat 4237.113 kb on + strand, within yjbHat 4237.200 kb on - strand, within yjbHat 4237.233 kb on - strand, within yjbHat 4237.282 kb on - strand, within yjbHat 4237.326 kb on + strand, within yjbHat 4237.326 kb on + strand, within yjbHat 4237.406 kb on + strand, within yjbHat 4237.440 kb on - strand, within yjbHat 4237.472 kb on - strand, within yjbHat 4237.488 kb on + strand, within yjbHat 4237.526 kb on - strand, within yjbHat 4237.533 kb on + strand, within yjbHat 4237.578 kb on - strandat 4237.578 kb on - strandat 4237.580 kb on - strandat 4237.667 kb on + strandat 4237.667 kb on + strandat 4237.781 kb on + strandat 4237.907 kb on - strand, within yjbTat 4237.911 kb on + strand, within yjbTat 4237.911 kb on + strand, within yjbTat 4237.931 kb on + strand, within yjbTat 4237.931 kb on + strand, within yjbTat 4237.950 kb on + strand, within yjbTat 4237.963 kb on - strand, within yjbTat 4238.017 kb on + strand, within yjbTat 4238.017 kb on + strand, within yjbTat 4238.320 kb on - strandat 4238.331 kb on + strandat 4238.331 kb on + strandat 4238.335 kb on + strandat 4238.360 kb on + strandat 4238.419 kb on + strand, within yjbAat 4238.419 kb on + strand, within yjbAat 4238.526 kb on - strand, within yjbAat 4238.600 kb on + strand, within yjbAat 4238.631 kb on + strand, within yjbAat 4238.631 kb on + strand, within yjbAat 4238.686 kb on + strand, within yjbAat 4238.686 kb on + strand, within yjbAat 4238.718 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Δdbn_10
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4,234,668 + yjbF b4027 0.60 -3.5
4,234,668 + yjbF b4027 0.60 -3.0
4,234,676 - yjbF b4027 0.61 -4.8
4,234,676 - yjbF b4027 0.61 +1.4
4,234,698 - yjbF b4027 0.65 -2.2
4,234,698 - yjbF b4027 0.65 -3.7
4,234,722 - yjbF b4027 0.68 +0.9
4,234,821 + yjbF b4027 0.84 +0.1
4,234,829 - yjbF b4027 0.85 +0.2
4,235,042 + yjbG b4028 0.17 +1.5
4,235,053 + yjbG b4028 0.18 -0.2
4,235,053 + yjbG b4028 0.18 -2.7
4,235,072 - yjbG b4028 0.21 -2.8
4,235,147 + yjbG b4028 0.31 +0.1
4,235,164 + yjbG b4028 0.33 +0.6
4,235,164 + yjbG b4028 0.33 +0.9
4,235,252 - yjbG b4028 0.45 +0.5
4,235,341 + yjbG b4028 0.57 -2.5
4,235,374 - yjbG b4028 0.62 +0.2
4,235,391 - yjbG b4028 0.64 +0.4
4,235,397 - yjbG b4028 0.65 -1.6
4,235,424 - yjbG b4028 0.68 -2.0
4,235,544 - yjbG b4028 0.85 +1.2
4,235,591 + -0.5
4,235,591 + -4.0
4,235,607 + -0.8
4,235,607 + -1.8
4,235,899 - yjbH b4029 0.12 +1.1
4,236,051 + yjbH b4029 0.19 +0.1
4,236,051 + yjbH b4029 0.19 -3.8
4,236,051 + yjbH b4029 0.19 -2.1
4,236,051 + yjbH b4029 0.19 -3.1
4,236,056 + yjbH b4029 0.19 -2.7
4,236,069 - yjbH b4029 0.20 +1.4
4,236,083 - yjbH b4029 0.20 +0.4
4,236,100 - yjbH b4029 0.21 -3.2
4,236,108 + yjbH b4029 0.22 -2.9
4,236,260 - yjbH b4029 0.29 -0.2
4,236,263 + yjbH b4029 0.29 +0.1
4,236,417 + yjbH b4029 0.36 +0.5
4,236,447 - yjbH b4029 0.38 +0.1
4,236,505 - yjbH b4029 0.40 +0.4
4,236,505 - yjbH b4029 0.40 -0.8
4,236,571 - yjbH b4029 0.44 -4.8
4,236,605 - yjbH b4029 0.45 -3.7
4,236,669 + yjbH b4029 0.48 -3.5
4,236,672 - yjbH b4029 0.48 +0.4
4,236,906 - yjbH b4029 0.60 +0.7
4,236,944 + yjbH b4029 0.61 -0.7
4,236,944 + yjbH b4029 0.61 -2.6
4,236,992 - yjbH b4029 0.64 +0.8
4,236,992 - yjbH b4029 0.64 +0.0
4,237,034 + yjbH b4029 0.66 +0.7
4,237,113 + yjbH b4029 0.69 -1.3
4,237,200 - yjbH b4029 0.74 +1.3
4,237,233 - yjbH b4029 0.75 +0.9
4,237,282 - yjbH b4029 0.77 +1.0
4,237,326 + yjbH b4029 0.80 +0.4
4,237,326 + yjbH b4029 0.80 -1.6
4,237,406 + yjbH b4029 0.83 -3.1
4,237,440 - yjbH b4029 0.85 -2.7
4,237,472 - yjbH b4029 0.87 -0.3
4,237,488 + yjbH b4029 0.87 +0.1
4,237,526 - yjbH b4029 0.89 +0.5
4,237,533 + yjbH b4029 0.89 -2.0
4,237,578 - -2.8
4,237,578 - -2.1
4,237,580 - -3.5
4,237,667 + -3.2
4,237,667 + +1.0
4,237,781 + +0.9
4,237,907 - yjbT b4620 0.38 +0.9
4,237,911 + yjbT b4620 0.40 -0.4
4,237,911 + yjbT b4620 0.40 -0.2
4,237,931 + yjbT b4620 0.47 -2.3
4,237,931 + yjbT b4620 0.47 -0.7
4,237,950 + yjbT b4620 0.54 -0.8
4,237,963 - yjbT b4620 0.58 +1.3
4,238,017 + yjbT b4620 0.78 -0.2
4,238,017 + yjbT b4620 0.78 -0.5
4,238,320 - -3.3
4,238,331 + -0.4
4,238,331 + +0.9
4,238,335 + +0.8
4,238,360 + -4.3
4,238,419 + yjbA b4030 0.17 -0.5
4,238,419 + yjbA b4030 0.17 +0.9
4,238,526 - yjbA b4030 0.43 +0.2
4,238,600 + yjbA b4030 0.61 -1.1
4,238,631 + yjbA b4030 0.69 +0.5
4,238,631 + yjbA b4030 0.69 -0.2
4,238,686 + yjbA b4030 0.82 -1.8
4,238,686 + yjbA b4030 0.82 -2.8
4,238,718 + +1.5

Or see this region's nucleotide sequence