Experiment: Δdbn_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt arsB and arsC are separated by 12 nucleotides arsC and yhiS are separated by 628 nucleotides
b3502: arsB - arsenical pump membrane protein (VIMSS), at 3,646,958 to 3,648,247
arsB
b3503: arsC - arsenate reductase (NCBI), at 3,648,260 to 3,648,685
arsC
b3504: yhiS - hypothetical protein (RefSeq), at 3,649,314 to 3,650,054
yhiS
Position (kb)
3648
3649 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3647.403 kb on + strand, within arsB at 3647.423 kb on + strand, within arsB at 3647.471 kb on - strand, within arsB at 3647.471 kb on - strand, within arsB at 3647.482 kb on + strand, within arsB at 3647.534 kb on + strand, within arsB at 3647.569 kb on + strand, within arsB at 3647.569 kb on + strand, within arsB at 3647.569 kb on + strand, within arsB at 3647.608 kb on + strand, within arsB at 3647.608 kb on + strand, within arsB at 3647.611 kb on - strand, within arsB at 3647.684 kb on - strand, within arsB at 3647.684 kb on - strand, within arsB at 3647.706 kb on + strand, within arsB at 3647.706 kb on - strand, within arsB at 3647.728 kb on + strand, within arsB at 3647.770 kb on + strand, within arsB at 3647.777 kb on + strand, within arsB at 3647.816 kb on + strand, within arsB at 3647.820 kb on + strand, within arsB at 3647.835 kb on + strand, within arsB at 3647.835 kb on + strand, within arsB at 3647.842 kb on - strand, within arsB at 3647.843 kb on - strand, within arsB at 3647.858 kb on - strand, within arsB at 3647.864 kb on - strand, within arsB at 3647.876 kb on + strand, within arsB at 3647.926 kb on - strand, within arsB at 3647.926 kb on - strand, within arsB at 3647.950 kb on + strand, within arsB at 3647.957 kb on + strand, within arsB at 3647.978 kb on + strand, within arsB at 3647.995 kb on + strand, within arsB at 3647.995 kb on + strand, within arsB at 3647.997 kb on + strand, within arsB at 3648.003 kb on - strand, within arsB at 3648.016 kb on + strand, within arsB at 3648.055 kb on + strand, within arsB at 3648.098 kb on - strand, within arsB at 3648.098 kb on - strand, within arsB at 3648.104 kb on + strand, within arsB at 3648.109 kb on + strand, within arsB at 3648.109 kb on + strand, within arsB at 3648.112 kb on - strand, within arsB at 3648.112 kb on - strand, within arsB at 3648.117 kb on - strand, within arsB at 3648.117 kb on - strand, within arsB at 3648.117 kb on - strand, within arsB at 3648.117 kb on - strand, within arsB at 3648.148 kb on - strand at 3648.155 kb on + strand at 3648.155 kb on + strand at 3648.155 kb on + strand at 3648.173 kb on - strand at 3648.175 kb on + strand at 3648.181 kb on - strand at 3648.199 kb on + strand at 3648.207 kb on - strand at 3648.207 kb on - strand at 3648.210 kb on + strand at 3648.210 kb on + strand at 3648.218 kb on - strand at 3648.218 kb on - strand at 3648.222 kb on + strand at 3648.229 kb on - strand at 3648.234 kb on + strand at 3648.234 kb on + strand at 3648.240 kb on - strand at 3648.240 kb on - strand at 3648.252 kb on - strand at 3648.252 kb on - strand at 3648.257 kb on + strand at 3648.257 kb on + strand at 3648.320 kb on - strand, within arsC at 3648.320 kb on - strand, within arsC at 3648.325 kb on + strand, within arsC at 3648.391 kb on + strand, within arsC at 3648.391 kb on + strand, within arsC at 3648.458 kb on - strand, within arsC at 3648.458 kb on - strand, within arsC at 3648.461 kb on - strand, within arsC at 3648.461 kb on - strand, within arsC at 3648.559 kb on + strand, within arsC at 3648.569 kb on + strand, within arsC at 3648.582 kb on - strand, within arsC at 3648.590 kb on - strand, within arsC at 3648.638 kb on - strand, within arsC at 3648.661 kb on - strand at 3648.663 kb on + strand at 3648.690 kb on + strand at 3648.697 kb on + strand at 3648.697 kb on + strand at 3648.701 kb on + strand at 3648.701 kb on + strand at 3648.753 kb on - strand at 3648.754 kb on + strand at 3648.754 kb on + strand at 3648.765 kb on + strand at 3648.809 kb on + strand at 3648.814 kb on + strand at 3648.836 kb on + strand at 3648.836 kb on + strand at 3648.844 kb on + strand at 3648.882 kb on + strand at 3648.891 kb on + strand at 3648.893 kb on + strand at 3648.893 kb on + strand at 3648.893 kb on + strand at 3648.893 kb on + strand at 3648.893 kb on + strand at 3648.893 kb on + strand at 3648.893 kb on + strand at 3648.893 kb on + strand at 3648.893 kb on + strand at 3648.893 kb on + strand at 3648.895 kb on + strand at 3648.901 kb on - strand at 3648.901 kb on - strand at 3648.901 kb on - strand at 3648.901 kb on - strand at 3648.901 kb on - strand at 3648.903 kb on - strand at 3648.905 kb on + strand at 3648.906 kb on - strand at 3648.908 kb on + strand at 3648.908 kb on + strand at 3648.908 kb on + strand at 3648.916 kb on - strand at 3648.918 kb on + strand at 3648.921 kb on - strand at 3648.921 kb on - strand at 3648.926 kb on - strand at 3648.926 kb on - strand at 3648.931 kb on - strand at 3648.931 kb on - strand at 3648.931 kb on - strand at 3648.935 kb on + strand at 3648.936 kb on - strand at 3649.111 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Δdbn_10 remove 3,647,403 + arsB b3502 0.34 -2.7 3,647,423 + arsB b3502 0.36 +0.7 3,647,471 - arsB b3502 0.40 +3.7 3,647,471 - arsB b3502 0.40 -1.3 3,647,482 + arsB b3502 0.41 +0.3 3,647,534 + arsB b3502 0.45 -3.3 3,647,569 + arsB b3502 0.47 +1.4 3,647,569 + arsB b3502 0.47 -0.4 3,647,569 + arsB b3502 0.47 -1.1 3,647,608 + arsB b3502 0.50 +0.7 3,647,608 + arsB b3502 0.50 -0.0 3,647,611 - arsB b3502 0.51 +0.9 3,647,684 - arsB b3502 0.56 -3.9 3,647,684 - arsB b3502 0.56 -0.6 3,647,706 + arsB b3502 0.58 -2.3 3,647,706 - arsB b3502 0.58 +1.4 3,647,728 + arsB b3502 0.60 -1.1 3,647,770 + arsB b3502 0.63 -1.5 3,647,777 + arsB b3502 0.63 +0.3 3,647,816 + arsB b3502 0.67 -2.7 3,647,820 + arsB b3502 0.67 +0.0 3,647,835 + arsB b3502 0.68 +1.3 3,647,835 + arsB b3502 0.68 +1.4 3,647,842 - arsB b3502 0.69 +1.4 3,647,843 - arsB b3502 0.69 -4.4 3,647,858 - arsB b3502 0.70 +0.6 3,647,864 - arsB b3502 0.70 -4.6 3,647,876 + arsB b3502 0.71 +0.1 3,647,926 - arsB b3502 0.75 -4.1 3,647,926 - arsB b3502 0.75 +2.5 3,647,950 + arsB b3502 0.77 +0.4 3,647,957 + arsB b3502 0.77 -0.3 3,647,978 + arsB b3502 0.79 -1.6 3,647,995 + arsB b3502 0.80 +0.8 3,647,995 + arsB b3502 0.80 +0.7 3,647,997 + arsB b3502 0.81 +0.6 3,648,003 - arsB b3502 0.81 +1.7 3,648,016 + arsB b3502 0.82 -3.9 3,648,055 + arsB b3502 0.85 +1.5 3,648,098 - arsB b3502 0.88 +0.8 3,648,098 - arsB b3502 0.88 +1.2 3,648,104 + arsB b3502 0.89 -1.3 3,648,109 + arsB b3502 0.89 -1.5 3,648,109 + arsB b3502 0.89 +0.2 3,648,112 - arsB b3502 0.89 -2.5 3,648,112 - arsB b3502 0.89 -4.2 3,648,117 - arsB b3502 0.90 +1.7 3,648,117 - arsB b3502 0.90 -0.8 3,648,117 - arsB b3502 0.90 +0.8 3,648,117 - arsB b3502 0.90 -0.2 3,648,148 - -1.6 3,648,155 + +0.9 3,648,155 + -2.6 3,648,155 + -1.5 3,648,173 - -4.1 3,648,175 + +0.9 3,648,181 - -4.0 3,648,199 + -2.2 3,648,207 - -0.7 3,648,207 - -3.7 3,648,210 + +2.3 3,648,210 + +0.5 3,648,218 - -4.2 3,648,218 - -0.9 3,648,222 + +0.7 3,648,229 - -3.2 3,648,234 + -4.5 3,648,234 + -1.4 3,648,240 - -2.1 3,648,240 - +1.5 3,648,252 - +2.2 3,648,252 - -2.7 3,648,257 + -3.2 3,648,257 + -0.3 3,648,320 - arsC b3503 0.14 -4.1 3,648,320 - arsC b3503 0.14 +1.3 3,648,325 + arsC b3503 0.15 +0.6 3,648,391 + arsC b3503 0.31 +1.7 3,648,391 + arsC b3503 0.31 +1.2 3,648,458 - arsC b3503 0.46 +2.6 3,648,458 - arsC b3503 0.46 -2.4 3,648,461 - arsC b3503 0.47 -0.4 3,648,461 - arsC b3503 0.47 +1.0 3,648,559 + arsC b3503 0.70 +2.1 3,648,569 + arsC b3503 0.73 -1.4 3,648,582 - arsC b3503 0.76 +0.7 3,648,590 - arsC b3503 0.77 -2.3 3,648,638 - arsC b3503 0.89 +0.5 3,648,661 - +0.8 3,648,663 + +1.7 3,648,690 + +0.8 3,648,697 + +1.4 3,648,697 + +0.8 3,648,701 + -0.6 3,648,701 + +1.7 3,648,753 - +0.6 3,648,754 + +0.2 3,648,754 + -1.3 3,648,765 + +1.5 3,648,809 + -2.8 3,648,814 + +0.5 3,648,836 + -0.6 3,648,836 + -1.7 3,648,844 + +2.4 3,648,882 + -0.1 3,648,891 + -1.5 3,648,893 + +2.3 3,648,893 + +1.6 3,648,893 + -1.0 3,648,893 + -1.5 3,648,893 + +0.6 3,648,893 + -2.4 3,648,893 + -0.4 3,648,893 + +0.6 3,648,893 + +1.6 3,648,893 + -1.3 3,648,895 + -2.9 3,648,901 - -0.9 3,648,901 - -1.3 3,648,901 - -1.6 3,648,901 - +1.8 3,648,901 - -2.1 3,648,903 - -2.7 3,648,905 + -1.9 3,648,906 - -1.5 3,648,908 + -0.4 3,648,908 + -2.0 3,648,908 + -1.3 3,648,916 - -1.3 3,648,918 + +0.1 3,648,921 - +3.0 3,648,921 - -2.1 3,648,926 - +0.2 3,648,926 - -0.6 3,648,931 - +0.6 3,648,931 - -1.5 3,648,931 - +0.6 3,648,935 + +0.2 3,648,936 - +1.2 3,649,111 + -0.4
Or see this region's nucleotide sequence