Strain Fitness in Escherichia coli BW25113 around b2955

Experiment: Δdbn_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyggT and yggU overlap by 4 nucleotidesyggU and yggV are separated by 7 nucleotidesyggV and yggW overlap by 8 nucleotidesyggW and yggM are separated by 154 nucleotides b2952: yggT - predicted inner membrane protein (NCBI), at 3,093,842 to 3,094,408 yggT b2953: yggU - orf, hypothetical protein (VIMSS), at 3,094,405 to 3,094,695 yggU b2954: yggV - putative deoxyribonucleotide triphosphate pyrophosphatase (NCBI), at 3,094,703 to 3,095,296 yggV b2955: yggW - coproporphyrinogen III oxidase (NCBI), at 3,095,289 to 3,096,425 yggW b2956: yggM - hypothetical protein (NCBI), at 3,096,580 to 3,097,587 yggM Position (kb) 3095 3096 3097Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3094.290 kb on + strand, within yggTat 3094.319 kb on + strand, within yggTat 3094.324 kb on + strand, within yggTat 3094.333 kb on + strand, within yggTat 3094.333 kb on + strand, within yggTat 3094.391 kb on - strandat 3094.400 kb on + strandat 3094.400 kb on + strandat 3094.451 kb on + strand, within yggUat 3094.451 kb on + strand, within yggUat 3094.542 kb on + strand, within yggUat 3094.775 kb on + strand, within yggVat 3094.879 kb on + strand, within yggVat 3094.920 kb on - strand, within yggVat 3094.948 kb on + strand, within yggVat 3095.006 kb on + strand, within yggVat 3095.095 kb on - strand, within yggVat 3095.115 kb on + strand, within yggVat 3095.136 kb on + strand, within yggVat 3095.299 kb on - strandat 3095.380 kb on + strandat 3095.409 kb on - strand, within yggWat 3095.442 kb on - strand, within yggWat 3095.448 kb on + strand, within yggWat 3095.456 kb on - strand, within yggWat 3095.485 kb on + strand, within yggWat 3095.609 kb on - strand, within yggWat 3095.661 kb on - strand, within yggWat 3095.757 kb on - strand, within yggWat 3095.844 kb on - strand, within yggWat 3095.886 kb on + strand, within yggWat 3095.902 kb on + strand, within yggWat 3096.070 kb on - strand, within yggWat 3096.104 kb on - strand, within yggWat 3096.146 kb on + strand, within yggWat 3096.179 kb on - strand, within yggWat 3096.242 kb on + strand, within yggWat 3096.242 kb on + strand, within yggWat 3096.281 kb on - strand, within yggWat 3096.319 kb on - strandat 3096.319 kb on - strandat 3096.327 kb on + strandat 3096.453 kb on + strandat 3096.550 kb on - strandat 3096.579 kb on - strandat 3096.846 kb on + strand, within yggMat 3096.847 kb on - strand, within yggMat 3096.858 kb on + strand, within yggMat 3096.866 kb on - strand, within yggMat 3096.866 kb on - strand, within yggMat 3096.899 kb on - strand, within yggMat 3097.084 kb on - strand, within yggMat 3097.107 kb on - strand, within yggMat 3097.207 kb on - strand, within yggMat 3097.252 kb on + strand, within yggMat 3097.252 kb on + strand, within yggMat 3097.420 kb on - strand, within yggMat 3097.420 kb on - strand, within yggM

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Per-strain Table

Position Strand Gene LocusTag Fraction Δdbn_10
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3,094,290 + yggT b2952 0.79 +0.8
3,094,319 + yggT b2952 0.84 -0.8
3,094,324 + yggT b2952 0.85 -2.0
3,094,333 + yggT b2952 0.87 -1.2
3,094,333 + yggT b2952 0.87 +1.1
3,094,391 - +0.4
3,094,400 + -0.9
3,094,400 + -3.9
3,094,451 + yggU b2953 0.16 -2.0
3,094,451 + yggU b2953 0.16 -3.5
3,094,542 + yggU b2953 0.47 -3.4
3,094,775 + yggV b2954 0.12 -0.3
3,094,879 + yggV b2954 0.30 +1.0
3,094,920 - yggV b2954 0.37 -3.0
3,094,948 + yggV b2954 0.41 +1.5
3,095,006 + yggV b2954 0.51 +0.2
3,095,095 - yggV b2954 0.66 +0.9
3,095,115 + yggV b2954 0.69 -1.3
3,095,136 + yggV b2954 0.73 -3.0
3,095,299 - +0.8
3,095,380 + -2.2
3,095,409 - yggW b2955 0.11 -2.8
3,095,442 - yggW b2955 0.13 -0.9
3,095,448 + yggW b2955 0.14 -2.9
3,095,456 - yggW b2955 0.15 +0.1
3,095,485 + yggW b2955 0.17 -3.1
3,095,609 - yggW b2955 0.28 -4.0
3,095,661 - yggW b2955 0.33 -3.9
3,095,757 - yggW b2955 0.41 +0.0
3,095,844 - yggW b2955 0.49 -1.8
3,095,886 + yggW b2955 0.53 -3.4
3,095,902 + yggW b2955 0.54 +1.0
3,096,070 - yggW b2955 0.69 +0.1
3,096,104 - yggW b2955 0.72 -2.5
3,096,146 + yggW b2955 0.75 -0.2
3,096,179 - yggW b2955 0.78 -1.4
3,096,242 + yggW b2955 0.84 +1.4
3,096,242 + yggW b2955 0.84 -3.6
3,096,281 - yggW b2955 0.87 -4.1
3,096,319 - -1.5
3,096,319 - -0.4
3,096,327 + -3.9
3,096,453 + -1.2
3,096,550 - +1.7
3,096,579 - -0.4
3,096,846 + yggM b2956 0.26 +1.3
3,096,847 - yggM b2956 0.26 -4.0
3,096,858 + yggM b2956 0.28 -2.3
3,096,866 - yggM b2956 0.28 -0.4
3,096,866 - yggM b2956 0.28 +0.9
3,096,899 - yggM b2956 0.32 -0.1
3,097,084 - yggM b2956 0.50 -3.2
3,097,107 - yggM b2956 0.52 +1.3
3,097,207 - yggM b2956 0.62 -4.4
3,097,252 + yggM b2956 0.67 -0.1
3,097,252 + yggM b2956 0.67 +1.7
3,097,420 - yggM b2956 0.83 -1.7
3,097,420 - yggM b2956 0.83 +1.5

Or see this region's nucleotide sequence