Strain Fitness in Escherichia coli BW25113 around b2628

Experiment: Δdbn_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyfjK and yfjL overlap by 4 nucleotidesyfjL and yfjM are separated by 359 nucleotidesyfjM and yfjN are separated by 141 nucleotides b2627: yfjK - CP4-57 prophage; conserved protein (NCBI), at 2,759,373 to 2,761,562 yfjK b2628: yfjL - CP4-57 prophage; predicted protein (NCBI), at 2,761,559 to 2,763,175 yfjL b2629: yfjM - CP4-57 prophage; predicted protein (NCBI), at 2,763,535 to 2,763,798 yfjM b2630: yfjN - CP4-57 prophage; RNase LS (NCBI), at 2,763,940 to 2,765,013 yfjN Position (kb) 2761 2762 2763 2764Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 2760.572 kb on + strand, within yfjKat 2760.587 kb on + strand, within yfjKat 2760.681 kb on - strand, within yfjKat 2760.803 kb on - strand, within yfjKat 2760.862 kb on - strand, within yfjKat 2760.862 kb on - strand, within yfjKat 2760.947 kb on - strand, within yfjKat 2760.990 kb on + strand, within yfjKat 2760.990 kb on + strand, within yfjKat 2761.107 kb on + strand, within yfjKat 2761.188 kb on + strand, within yfjKat 2761.211 kb on - strand, within yfjKat 2761.240 kb on + strand, within yfjKat 2761.297 kb on - strand, within yfjKat 2761.312 kb on - strand, within yfjKat 2761.312 kb on - strand, within yfjKat 2761.319 kb on + strand, within yfjKat 2761.454 kb on - strandat 2761.454 kb on - strandat 2762.010 kb on + strand, within yfjLat 2762.039 kb on - strand, within yfjLat 2762.218 kb on + strand, within yfjLat 2762.263 kb on - strand, within yfjLat 2762.272 kb on + strand, within yfjLat 2762.274 kb on - strand, within yfjLat 2762.313 kb on + strand, within yfjLat 2762.313 kb on + strand, within yfjLat 2762.316 kb on + strand, within yfjLat 2762.316 kb on + strand, within yfjLat 2762.323 kb on - strand, within yfjLat 2762.391 kb on - strand, within yfjLat 2762.405 kb on - strand, within yfjLat 2762.405 kb on - strand, within yfjLat 2762.500 kb on + strand, within yfjLat 2762.500 kb on + strand, within yfjLat 2762.545 kb on + strand, within yfjLat 2762.545 kb on + strand, within yfjLat 2762.555 kb on - strand, within yfjLat 2762.555 kb on - strand, within yfjLat 2762.626 kb on + strand, within yfjLat 2762.860 kb on + strand, within yfjLat 2762.878 kb on + strand, within yfjLat 2762.881 kb on - strand, within yfjLat 2762.881 kb on - strand, within yfjLat 2762.891 kb on - strand, within yfjLat 2762.918 kb on + strand, within yfjLat 2762.982 kb on + strand, within yfjLat 2763.052 kb on - strandat 2763.059 kb on + strandat 2763.074 kb on - strandat 2763.104 kb on - strandat 2763.119 kb on + strandat 2763.137 kb on + strandat 2763.173 kb on + strandat 2763.265 kb on - strandat 2763.265 kb on - strandat 2763.365 kb on + strandat 2763.411 kb on + strandat 2763.445 kb on + strandat 2763.445 kb on + strandat 2763.561 kb on - strandat 2763.561 kb on - strandat 2763.588 kb on - strand, within yfjMat 2763.611 kb on - strand, within yfjMat 2763.621 kb on - strand, within yfjMat 2763.642 kb on + strand, within yfjMat 2763.650 kb on - strand, within yfjMat 2763.652 kb on + strand, within yfjMat 2763.758 kb on + strand, within yfjMat 2763.758 kb on + strand, within yfjMat 2763.833 kb on + strandat 2763.833 kb on + strandat 2763.836 kb on + strandat 2763.836 kb on + strandat 2763.841 kb on - strandat 2763.844 kb on - strandat 2763.844 kb on - strandat 2763.851 kb on + strandat 2763.921 kb on + strandat 2764.043 kb on + strandat 2764.082 kb on + strand, within yfjNat 2764.093 kb on + strand, within yfjNat 2764.093 kb on + strand, within yfjN

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Per-strain Table

Position Strand Gene LocusTag Fraction Δdbn_10
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2,760,572 + yfjK b2627 0.55 +1.1
2,760,587 + yfjK b2627 0.55 -2.8
2,760,681 - yfjK b2627 0.60 +1.6
2,760,803 - yfjK b2627 0.65 +2.2
2,760,862 - yfjK b2627 0.68 +1.4
2,760,862 - yfjK b2627 0.68 +0.2
2,760,947 - yfjK b2627 0.72 +0.4
2,760,990 + yfjK b2627 0.74 +0.2
2,760,990 + yfjK b2627 0.74 +0.3
2,761,107 + yfjK b2627 0.79 -4.2
2,761,188 + yfjK b2627 0.83 -0.7
2,761,211 - yfjK b2627 0.84 -0.3
2,761,240 + yfjK b2627 0.85 -0.6
2,761,297 - yfjK b2627 0.88 +2.2
2,761,312 - yfjK b2627 0.89 -0.5
2,761,312 - yfjK b2627 0.89 +1.8
2,761,319 + yfjK b2627 0.89 +0.3
2,761,454 - -0.9
2,761,454 - -1.8
2,762,010 + yfjL b2628 0.28 -2.4
2,762,039 - yfjL b2628 0.30 -2.7
2,762,218 + yfjL b2628 0.41 +0.4
2,762,263 - yfjL b2628 0.44 -4.2
2,762,272 + yfjL b2628 0.44 +1.4
2,762,274 - yfjL b2628 0.44 +0.4
2,762,313 + yfjL b2628 0.47 +1.1
2,762,313 + yfjL b2628 0.47 -3.4
2,762,316 + yfjL b2628 0.47 +2.1
2,762,316 + yfjL b2628 0.47 -0.8
2,762,323 - yfjL b2628 0.47 -0.4
2,762,391 - yfjL b2628 0.51 -3.5
2,762,405 - yfjL b2628 0.52 -3.4
2,762,405 - yfjL b2628 0.52 -3.1
2,762,500 + yfjL b2628 0.58 -0.4
2,762,500 + yfjL b2628 0.58 +0.9
2,762,545 + yfjL b2628 0.61 -4.1
2,762,545 + yfjL b2628 0.61 -3.6
2,762,555 - yfjL b2628 0.62 -0.2
2,762,555 - yfjL b2628 0.62 -0.5
2,762,626 + yfjL b2628 0.66 -1.2
2,762,860 + yfjL b2628 0.80 -4.4
2,762,878 + yfjL b2628 0.82 +1.1
2,762,881 - yfjL b2628 0.82 -0.6
2,762,881 - yfjL b2628 0.82 -1.4
2,762,891 - yfjL b2628 0.82 -0.3
2,762,918 + yfjL b2628 0.84 -0.2
2,762,982 + yfjL b2628 0.88 -2.9
2,763,052 - -0.3
2,763,059 + -0.4
2,763,074 - -3.6
2,763,104 - -1.2
2,763,119 + -0.5
2,763,137 + -3.4
2,763,173 + +0.6
2,763,265 - -2.9
2,763,265 - -2.8
2,763,365 + -0.0
2,763,411 + -3.5
2,763,445 + -0.0
2,763,445 + +1.3
2,763,561 - -0.4
2,763,561 - +0.2
2,763,588 - yfjM b2629 0.20 -1.4
2,763,611 - yfjM b2629 0.29 -0.9
2,763,621 - yfjM b2629 0.33 +1.1
2,763,642 + yfjM b2629 0.41 -3.7
2,763,650 - yfjM b2629 0.44 -4.9
2,763,652 + yfjM b2629 0.44 +0.8
2,763,758 + yfjM b2629 0.84 +0.5
2,763,758 + yfjM b2629 0.84 +0.2
2,763,833 + +0.9
2,763,833 + -2.9
2,763,836 + -0.7
2,763,836 + -3.0
2,763,841 - +0.8
2,763,844 - -3.0
2,763,844 - -2.7
2,763,851 + +1.9
2,763,921 + +0.8
2,764,043 + -4.6
2,764,082 + yfjN b2630 0.13 +1.0
2,764,093 + yfjN b2630 0.14 -3.5
2,764,093 + yfjN b2630 0.14 -0.7

Or see this region's nucleotide sequence