Strain Fitness in Escherichia coli BW25113 around b1734

Experiment: Δdbn_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntchbG and chbF are separated by 12 nucleotideschbF and chbR are separated by 104 nucleotideschbR and chbA are separated by 7 nucleotides b1733: chbG - hypothetical protein (NCBI), at 1,814,410 to 1,815,159 chbG b1734: chbF - cryptic phospho-beta-glucosidase, NAD(P)-binding (NCBI), at 1,815,172 to 1,816,524 chbF b1735: chbR - DNA-binding transcriptional dual regulator (NCBI), at 1,816,629 to 1,817,471 chbR b1736: chbA - N,N'-diacetylchitobiose-specific enzyme IIA component of PTS (NCBI), at 1,817,479 to 1,817,829 chbA Position (kb) 1815 1816 1817Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 1814.415 kb on - strandat 1814.415 kb on - strandat 1814.484 kb on + strandat 1814.510 kb on - strand, within chbGat 1814.658 kb on + strand, within chbGat 1814.658 kb on + strand, within chbGat 1814.702 kb on - strand, within chbGat 1814.945 kb on + strand, within chbGat 1814.945 kb on + strand, within chbGat 1815.106 kb on - strandat 1815.143 kb on + strandat 1815.261 kb on - strandat 1815.261 kb on - strandat 1815.280 kb on + strandat 1815.369 kb on - strand, within chbFat 1815.383 kb on - strand, within chbFat 1815.392 kb on - strand, within chbFat 1815.392 kb on - strand, within chbFat 1815.425 kb on - strand, within chbFat 1815.428 kb on + strand, within chbFat 1815.439 kb on + strand, within chbFat 1815.511 kb on + strand, within chbFat 1815.512 kb on + strand, within chbFat 1815.520 kb on - strand, within chbFat 1815.535 kb on + strand, within chbFat 1815.545 kb on + strand, within chbFat 1815.574 kb on - strand, within chbFat 1815.661 kb on + strand, within chbFat 1815.671 kb on + strand, within chbFat 1815.671 kb on + strand, within chbFat 1815.691 kb on + strand, within chbFat 1815.726 kb on + strand, within chbFat 1815.750 kb on + strand, within chbFat 1815.753 kb on - strand, within chbFat 1815.758 kb on - strand, within chbFat 1815.758 kb on - strand, within chbFat 1815.781 kb on + strand, within chbFat 1815.794 kb on + strand, within chbFat 1815.830 kb on + strand, within chbFat 1815.841 kb on - strand, within chbFat 1815.841 kb on - strand, within chbFat 1815.846 kb on - strand, within chbFat 1815.847 kb on + strand, within chbFat 1815.847 kb on + strand, within chbFat 1815.860 kb on - strand, within chbFat 1815.899 kb on + strand, within chbFat 1816.050 kb on - strand, within chbFat 1816.050 kb on - strand, within chbFat 1816.226 kb on - strand, within chbFat 1816.271 kb on - strand, within chbFat 1816.286 kb on - strand, within chbFat 1816.286 kb on - strand, within chbFat 1816.303 kb on + strand, within chbFat 1816.727 kb on - strand, within chbRat 1816.954 kb on - strand, within chbRat 1816.977 kb on - strand, within chbRat 1816.977 kb on - strand, within chbRat 1816.982 kb on - strand, within chbRat 1816.982 kb on - strand, within chbRat 1817.004 kb on - strand, within chbRat 1817.053 kb on - strand, within chbRat 1817.053 kb on - strand, within chbRat 1817.156 kb on + strand, within chbRat 1817.217 kb on - strand, within chbRat 1817.217 kb on - strand, within chbRat 1817.278 kb on - strand, within chbRat 1817.298 kb on - strand, within chbRat 1817.363 kb on - strand, within chbRat 1817.387 kb on - strandat 1817.387 kb on - strandat 1817.431 kb on - strandat 1817.431 kb on - strandat 1817.431 kb on - strandat 1817.469 kb on - strandat 1817.471 kb on - strandat 1817.483 kb on - strandat 1817.483 kb on - strandat 1817.485 kb on - strandat 1817.485 kb on - strandat 1817.486 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Δdbn_10
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1,814,415 - +0.1
1,814,415 - -0.7
1,814,484 + -0.9
1,814,510 - chbG b1733 0.13 +0.7
1,814,658 + chbG b1733 0.33 -0.2
1,814,658 + chbG b1733 0.33 -0.4
1,814,702 - chbG b1733 0.39 +0.6
1,814,945 + chbG b1733 0.71 -1.1
1,814,945 + chbG b1733 0.71 -0.6
1,815,106 - -2.0
1,815,143 + +1.5
1,815,261 - -1.9
1,815,261 - +0.4
1,815,280 + -1.0
1,815,369 - chbF b1734 0.15 -3.3
1,815,383 - chbF b1734 0.16 -0.2
1,815,392 - chbF b1734 0.16 -1.3
1,815,392 - chbF b1734 0.16 +2.6
1,815,425 - chbF b1734 0.19 +1.7
1,815,428 + chbF b1734 0.19 +0.0
1,815,439 + chbF b1734 0.20 +3.1
1,815,511 + chbF b1734 0.25 +3.6
1,815,512 + chbF b1734 0.25 +1.0
1,815,520 - chbF b1734 0.26 +1.7
1,815,535 + chbF b1734 0.27 -1.4
1,815,545 + chbF b1734 0.28 +1.0
1,815,574 - chbF b1734 0.30 +2.6
1,815,661 + chbF b1734 0.36 -1.5
1,815,671 + chbF b1734 0.37 -0.4
1,815,671 + chbF b1734 0.37 -1.2
1,815,691 + chbF b1734 0.38 +0.0
1,815,726 + chbF b1734 0.41 +2.1
1,815,750 + chbF b1734 0.43 +0.6
1,815,753 - chbF b1734 0.43 +2.6
1,815,758 - chbF b1734 0.43 +2.6
1,815,758 - chbF b1734 0.43 +2.6
1,815,781 + chbF b1734 0.45 -0.4
1,815,794 + chbF b1734 0.46 -1.3
1,815,830 + chbF b1734 0.49 +2.6
1,815,841 - chbF b1734 0.49 +3.2
1,815,841 - chbF b1734 0.49 -1.3
1,815,846 - chbF b1734 0.50 -2.8
1,815,847 + chbF b1734 0.50 +0.6
1,815,847 + chbF b1734 0.50 +2.6
1,815,860 - chbF b1734 0.51 +0.6
1,815,899 + chbF b1734 0.54 +1.6
1,816,050 - chbF b1734 0.65 +2.3
1,816,050 - chbF b1734 0.65 -1.7
1,816,226 - chbF b1734 0.78 +0.6
1,816,271 - chbF b1734 0.81 +2.6
1,816,286 - chbF b1734 0.82 +3.2
1,816,286 - chbF b1734 0.82 +2.6
1,816,303 + chbF b1734 0.84 +0.6
1,816,727 - chbR b1735 0.12 +2.6
1,816,954 - chbR b1735 0.39 +0.3
1,816,977 - chbR b1735 0.41 +0.3
1,816,977 - chbR b1735 0.41 +1.0
1,816,982 - chbR b1735 0.42 -0.9
1,816,982 - chbR b1735 0.42 +2.4
1,817,004 - chbR b1735 0.44 -0.4
1,817,053 - chbR b1735 0.50 -0.6
1,817,053 - chbR b1735 0.50 +2.6
1,817,156 + chbR b1735 0.63 +1.6
1,817,217 - chbR b1735 0.70 +0.3
1,817,217 - chbR b1735 0.70 -1.0
1,817,278 - chbR b1735 0.77 +1.6
1,817,298 - chbR b1735 0.79 +2.0
1,817,363 - chbR b1735 0.87 -1.3
1,817,387 - -0.9
1,817,387 - -2.0
1,817,431 - +0.3
1,817,431 - -3.8
1,817,431 - -0.5
1,817,469 - +5.2
1,817,471 - +1.3
1,817,483 - +0.0
1,817,483 - +0.3
1,817,485 - -1.3
1,817,485 - +0.8
1,817,486 - +0.3

Or see this region's nucleotide sequence