Experiment: Δdbn_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nhoA and yddE are separated by 95 nucleotides yddE and narV are separated by 78 nucleotides narV and narW overlap by 4 nucleotides
b1463: nhoA - N-hydroxyarylamine O-acetyltransferase (NCBI), at 1,532,048 to 1,532,893
nhoA
b1464: yddE - hypothetical protein (NCBI), at 1,532,989 to 1,533,882
yddE
b1465: narV - nitrate reductase 2 (NRZ), gamma subunit (NCBI), at 1,533,961 to 1,534,641
narV
b1466: narW - nitrate reductase 2 (NRZ), delta subunit (assembly subunit) (NCBI), at 1,534,638 to 1,535,333
narW
Position (kb)
1532
1533
1534 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1532.030 kb on - strand at 1532.030 kb on - strand at 1532.151 kb on - strand, within nhoA at 1532.151 kb on - strand, within nhoA at 1532.151 kb on - strand, within nhoA at 1532.159 kb on + strand, within nhoA at 1532.159 kb on + strand, within nhoA at 1532.497 kb on - strand, within nhoA at 1532.497 kb on - strand, within nhoA at 1532.501 kb on + strand, within nhoA at 1532.501 kb on + strand, within nhoA at 1532.517 kb on - strand, within nhoA at 1532.530 kb on - strand, within nhoA at 1532.595 kb on + strand, within nhoA at 1532.688 kb on + strand, within nhoA at 1532.696 kb on - strand, within nhoA at 1532.746 kb on + strand, within nhoA at 1532.785 kb on - strand, within nhoA at 1532.834 kb on - strand at 1532.950 kb on + strand at 1533.034 kb on + strand at 1533.090 kb on - strand, within yddE at 1533.090 kb on - strand, within yddE at 1533.171 kb on + strand, within yddE at 1533.171 kb on + strand, within yddE at 1533.174 kb on - strand, within yddE at 1533.177 kb on + strand, within yddE at 1533.195 kb on + strand, within yddE at 1533.195 kb on + strand, within yddE at 1533.288 kb on - strand, within yddE at 1533.377 kb on - strand, within yddE at 1533.377 kb on - strand, within yddE at 1533.643 kb on - strand, within yddE at 1533.650 kb on + strand, within yddE at 1533.735 kb on + strand, within yddE at 1533.892 kb on + strand at 1533.947 kb on - strand at 1534.325 kb on - strand, within narV at 1534.336 kb on + strand, within narV at 1534.625 kb on + strand at 1534.659 kb on + strand at 1534.659 kb on + strand at 1534.776 kb on + strand, within narW
Per-strain Table
Position Strand Gene LocusTag Fraction Δdbn_10 remove 1,532,030 - -2.1 1,532,030 - -0.5 1,532,151 - nhoA b1463 0.12 -1.9 1,532,151 - nhoA b1463 0.12 +0.3 1,532,151 - nhoA b1463 0.12 +1.8 1,532,159 + nhoA b1463 0.13 +0.3 1,532,159 + nhoA b1463 0.13 -1.4 1,532,497 - nhoA b1463 0.53 +1.3 1,532,497 - nhoA b1463 0.53 +1.4 1,532,501 + nhoA b1463 0.54 -1.7 1,532,501 + nhoA b1463 0.54 +0.4 1,532,517 - nhoA b1463 0.55 -0.2 1,532,530 - nhoA b1463 0.57 +1.6 1,532,595 + nhoA b1463 0.65 +1.2 1,532,688 + nhoA b1463 0.76 -3.4 1,532,696 - nhoA b1463 0.77 +1.4 1,532,746 + nhoA b1463 0.83 -3.6 1,532,785 - nhoA b1463 0.87 +1.7 1,532,834 - +0.6 1,532,950 + +0.8 1,533,034 + -0.6 1,533,090 - yddE b1464 0.11 -0.3 1,533,090 - yddE b1464 0.11 -1.9 1,533,171 + yddE b1464 0.20 +1.1 1,533,171 + yddE b1464 0.20 -0.8 1,533,174 - yddE b1464 0.21 -0.2 1,533,177 + yddE b1464 0.21 -0.5 1,533,195 + yddE b1464 0.23 +1.3 1,533,195 + yddE b1464 0.23 +0.8 1,533,288 - yddE b1464 0.33 -3.0 1,533,377 - yddE b1464 0.43 -2.6 1,533,377 - yddE b1464 0.43 -2.7 1,533,643 - yddE b1464 0.73 +1.0 1,533,650 + yddE b1464 0.74 +0.3 1,533,735 + yddE b1464 0.83 -2.3 1,533,892 + -3.2 1,533,947 - -2.0 1,534,325 - narV b1465 0.53 -4.1 1,534,336 + narV b1465 0.55 +1.6 1,534,625 + +1.7 1,534,659 + +0.4 1,534,659 + -1.9 1,534,776 + narW b1466 0.20 -0.2
Or see this region's nucleotide sequence