Experiment: Δdbn_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tyrR and tpx are separated by 43 nucleotides tpx and ycjG are separated by 118 nucleotides ycjG and mpaA overlap by 26 nucleotides mpaA and ymjC are separated by 126 nucleotides ymjC and ymjD are separated by 5 nucleotides
b1323: tyrR - DNA-binding transcriptional dual regulator, tyrosine-binding (NCBI), at 1,384,744 to 1,386,285
tyrR
b1324: tpx - thiol peroxidase (NCBI), at 1,386,329 to 1,386,835
tpx
b1325: ycjG - putative muconate cycloisomerase I (EC 5.5.-.-) (VIMSS), at 1,386,954 to 1,387,919
ycjG
b1326: mpaA - murein peptide amidase A (RefSeq), at 1,387,894 to 1,388,622
mpaA
b4525: ymjC - no description, at 1,388,749 to 1,388,886
ymjC
b4673: ymjD - no description, at 1,388,892 to 1,388,957
ymjD
Position (kb)
1386
1387
1388 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1385.987 kb on - strand, within tyrR at 1386.014 kb on + strand, within tyrR at 1386.352 kb on - strand at 1386.352 kb on - strand at 1386.442 kb on + strand, within tpx at 1386.528 kb on + strand, within tpx at 1386.585 kb on + strand at 1386.585 kb on + strand, within tpx at 1386.603 kb on - strand, within tpx at 1386.603 kb on - strand, within tpx at 1386.742 kb on - strand, within tpx at 1386.748 kb on + strand, within tpx at 1386.923 kb on + strand at 1387.059 kb on + strand, within ycjG at 1387.076 kb on - strand, within ycjG at 1387.315 kb on - strand at 1387.352 kb on + strand, within ycjG at 1387.360 kb on - strand, within ycjG at 1387.417 kb on - strand, within ycjG at 1387.417 kb on - strand, within ycjG at 1387.485 kb on + strand, within ycjG at 1387.837 kb on - strand at 1387.837 kb on - strand at 1388.090 kb on + strand, within mpaA at 1388.195 kb on - strand, within mpaA at 1388.195 kb on - strand, within mpaA at 1388.195 kb on - strand, within mpaA at 1388.351 kb on - strand, within mpaA at 1388.438 kb on + strand, within mpaA at 1388.438 kb on + strand, within mpaA at 1388.446 kb on - strand, within mpaA at 1388.611 kb on + strand at 1388.628 kb on + strand at 1388.645 kb on + strand at 1388.797 kb on + strand, within ymjC
Per-strain Table
Position Strand Gene LocusTag Fraction Δdbn_10 remove 1,385,987 - tyrR b1323 0.81 +0.8 1,386,014 + tyrR b1323 0.82 +0.5 1,386,352 - -0.0 1,386,352 - +0.3 1,386,442 + tpx b1324 0.22 -1.4 1,386,528 + tpx b1324 0.39 +1.6 1,386,585 + -0.3 1,386,585 + tpx b1324 0.50 +0.6 1,386,603 - tpx b1324 0.54 +0.6 1,386,603 - tpx b1324 0.54 -0.2 1,386,742 - tpx b1324 0.81 +0.3 1,386,748 + tpx b1324 0.83 +1.0 1,386,923 + +1.3 1,387,059 + ycjG b1325 0.11 -0.2 1,387,076 - ycjG b1325 0.13 +0.0 1,387,315 - +0.6 1,387,352 + ycjG b1325 0.41 -0.3 1,387,360 - ycjG b1325 0.42 -0.0 1,387,417 - ycjG b1325 0.48 -2.3 1,387,417 - ycjG b1325 0.48 -1.4 1,387,485 + ycjG b1325 0.55 -3.5 1,387,837 - +2.1 1,387,837 - -0.2 1,388,090 + mpaA b1326 0.27 -2.3 1,388,195 - mpaA b1326 0.41 +0.5 1,388,195 - mpaA b1326 0.41 +2.6 1,388,195 - mpaA b1326 0.41 +0.6 1,388,351 - mpaA b1326 0.63 +0.1 1,388,438 + mpaA b1326 0.75 -0.9 1,388,438 + mpaA b1326 0.75 -0.8 1,388,446 - mpaA b1326 0.76 +0.9 1,388,611 + +0.1 1,388,628 + -0.7 1,388,645 + +1.0 1,388,797 + ymjC b4525 0.35 +0.9
Or see this region's nucleotide sequence