Experiment: Δdbn_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt efeU and ycdO are separated by 57 nucleotides ycdO and ycdB are separated by 5 nucleotides
b4490: efeU - no description, at 1,080,579 to 1,081,408
efeU
b1018: ycdO - hypothetical protein (NCBI), at 1,081,466 to 1,082,593
ycdO
b1019: ycdB - hypothetical protein (NCBI), at 1,082,599 to 1,083,870
ycdB
Position (kb)
1081
1082
1083 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1080.595 kb on + strand at 1080.684 kb on - strand, within efeU at 1080.696 kb on - strand, within efeU at 1080.701 kb on - strand, within efeU at 1080.787 kb on + strand, within efeU at 1080.823 kb on - strand, within efeU at 1080.823 kb on - strand, within efeU at 1080.898 kb on - strand, within efeU at 1080.907 kb on + strand, within efeU at 1080.924 kb on + strand, within efeU at 1080.924 kb on + strand, within efeU at 1080.957 kb on + strand, within efeU at 1081.013 kb on + strand, within efeU at 1081.047 kb on + strand, within efeU at 1081.081 kb on + strand, within efeU at 1081.246 kb on - strand, within efeU at 1081.246 kb on - strand, within efeU at 1081.251 kb on - strand, within efeU at 1081.269 kb on - strand, within efeU at 1081.269 kb on - strand, within efeU at 1081.377 kb on - strand at 1081.542 kb on - strand at 1081.577 kb on + strand at 1081.663 kb on + strand, within ycdO at 1081.663 kb on + strand, within ycdO at 1081.663 kb on - strand, within ycdO at 1081.663 kb on - strand, within ycdO at 1081.678 kb on - strand, within ycdO at 1081.852 kb on + strand, within ycdO at 1081.852 kb on + strand, within ycdO at 1081.908 kb on + strand, within ycdO at 1081.944 kb on + strand, within ycdO at 1081.979 kb on + strand, within ycdO at 1082.039 kb on + strand, within ycdO at 1082.039 kb on + strand, within ycdO at 1082.156 kb on - strand, within ycdO at 1082.179 kb on + strand, within ycdO at 1082.192 kb on - strand, within ycdO at 1082.382 kb on + strand, within ycdO at 1082.392 kb on + strand, within ycdO at 1082.515 kb on + strand at 1082.515 kb on + strand at 1082.594 kb on + strand at 1082.783 kb on - strand, within ycdB at 1082.787 kb on + strand, within ycdB at 1082.912 kb on + strand, within ycdB at 1083.109 kb on + strand, within ycdB at 1083.141 kb on - strand, within ycdB at 1083.141 kb on - strand, within ycdB at 1083.197 kb on + strand, within ycdB at 1083.212 kb on + strand, within ycdB
Per-strain Table
Position Strand Gene LocusTag Fraction Δdbn_10 remove 1,080,595 + +0.4 1,080,684 - efeU b4490 0.13 -2.4 1,080,696 - efeU b4490 0.14 +0.4 1,080,701 - efeU b4490 0.15 +1.0 1,080,787 + efeU b4490 0.25 +0.3 1,080,823 - efeU b4490 0.29 -0.7 1,080,823 - efeU b4490 0.29 +1.8 1,080,898 - efeU b4490 0.38 -2.3 1,080,907 + efeU b4490 0.40 -4.1 1,080,924 + efeU b4490 0.42 -3.0 1,080,924 + efeU b4490 0.42 +1.1 1,080,957 + efeU b4490 0.46 -3.4 1,081,013 + efeU b4490 0.52 -1.7 1,081,047 + efeU b4490 0.56 +0.1 1,081,081 + efeU b4490 0.60 +0.3 1,081,246 - efeU b4490 0.80 -2.8 1,081,246 - efeU b4490 0.80 +0.7 1,081,251 - efeU b4490 0.81 -0.1 1,081,269 - efeU b4490 0.83 -2.0 1,081,269 - efeU b4490 0.83 -0.4 1,081,377 - -1.1 1,081,542 - -0.5 1,081,577 + -0.7 1,081,663 + ycdO b1018 0.17 +1.8 1,081,663 + ycdO b1018 0.17 +0.2 1,081,663 - ycdO b1018 0.17 -0.2 1,081,663 - ycdO b1018 0.17 +0.4 1,081,678 - ycdO b1018 0.19 -3.5 1,081,852 + ycdO b1018 0.34 +0.1 1,081,852 + ycdO b1018 0.34 +1.5 1,081,908 + ycdO b1018 0.39 -0.0 1,081,944 + ycdO b1018 0.42 -0.4 1,081,979 + ycdO b1018 0.45 -1.5 1,082,039 + ycdO b1018 0.51 +1.0 1,082,039 + ycdO b1018 0.51 -0.2 1,082,156 - ycdO b1018 0.61 +0.0 1,082,179 + ycdO b1018 0.63 +1.1 1,082,192 - ycdO b1018 0.64 +0.4 1,082,382 + ycdO b1018 0.81 +0.2 1,082,392 + ycdO b1018 0.82 -2.1 1,082,515 + +1.1 1,082,515 + -0.7 1,082,594 + +0.1 1,082,783 - ycdB b1019 0.14 -0.8 1,082,787 + ycdB b1019 0.15 -0.3 1,082,912 + ycdB b1019 0.25 +2.0 1,083,109 + ycdB b1019 0.40 +0.8 1,083,141 - ycdB b1019 0.43 -3.0 1,083,141 - ycdB b1019 0.43 +1.6 1,083,197 + ycdB b1019 0.47 +2.9 1,083,212 + ycdB b1019 0.48 +0.0
Or see this region's nucleotide sequence