Strain Fitness in Escherichia coli BW25113 around b0876

Experiment: Δdbn_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntaqpZ and ybjD are separated by 425 nucleotidesybjD and ybjX overlap by 4 nucleotides b0875: aqpZ - aquaporin Z (NCBI), at 914,575 to 915,270 aqpZ b0876: ybjD - conserved protein with nucleoside triphosphate hydrolase domain (NCBI), at 915,696 to 917,354 ybjD b0877: ybjX - hypothetical protein (NCBI), at 917,351 to 918,343 ybjX Position (kb) 915 916 917 918Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 914.702 kb on - strand, within aqpZat 914.720 kb on - strand, within aqpZat 914.757 kb on + strand, within aqpZat 914.764 kb on + strand, within aqpZat 914.767 kb on - strand, within aqpZat 914.767 kb on - strand, within aqpZat 914.784 kb on + strand, within aqpZat 914.911 kb on + strand, within aqpZat 914.941 kb on + strand, within aqpZat 914.941 kb on + strand, within aqpZat 914.998 kb on + strand, within aqpZat 914.998 kb on + strand, within aqpZat 915.193 kb on + strand, within aqpZat 915.198 kb on + strand, within aqpZat 915.198 kb on + strand, within aqpZat 915.198 kb on + strand, within aqpZat 915.203 kb on + strandat 915.203 kb on + strandat 915.203 kb on + strandat 915.203 kb on + strandat 915.206 kb on - strandat 915.206 kb on - strandat 915.206 kb on - strandat 915.206 kb on - strandat 915.206 kb on - strandat 915.226 kb on - strandat 915.226 kb on - strandat 915.279 kb on + strandat 915.279 kb on + strandat 915.437 kb on - strandat 915.461 kb on - strandat 915.461 kb on - strandat 915.473 kb on - strandat 915.570 kb on - strandat 915.616 kb on - strandat 915.616 kb on - strandat 915.616 kb on - strandat 915.616 kb on - strandat 915.647 kb on + strandat 915.647 kb on - strandat 915.700 kb on + strandat 915.705 kb on - strandat 915.710 kb on + strandat 915.783 kb on - strandat 915.794 kb on + strandat 915.817 kb on + strandat 915.817 kb on + strandat 915.841 kb on + strandat 915.909 kb on + strand, within ybjDat 915.970 kb on - strand, within ybjDat 916.056 kb on - strand, within ybjDat 916.212 kb on + strand, within ybjDat 916.330 kb on + strand, within ybjDat 916.334 kb on + strand, within ybjDat 916.374 kb on - strand, within ybjDat 916.463 kb on + strand, within ybjDat 916.463 kb on + strand, within ybjDat 916.540 kb on - strand, within ybjDat 916.546 kb on + strand, within ybjDat 916.717 kb on - strand, within ybjDat 916.717 kb on - strand, within ybjDat 916.823 kb on + strand, within ybjDat 916.823 kb on + strand, within ybjDat 916.869 kb on + strand, within ybjDat 916.869 kb on + strand, within ybjDat 916.989 kb on + strand, within ybjDat 917.422 kb on - strandat 917.467 kb on + strand, within ybjXat 917.467 kb on + strand, within ybjXat 917.528 kb on + strand, within ybjXat 917.528 kb on + strand, within ybjXat 917.643 kb on - strand, within ybjXat 917.658 kb on - strand, within ybjXat 917.658 kb on - strand, within ybjXat 917.775 kb on + strand, within ybjXat 917.828 kb on + strand, within ybjXat 917.838 kb on + strand, within ybjXat 917.878 kb on + strand, within ybjXat 917.878 kb on + strand, within ybjXat 917.891 kb on - strand, within ybjXat 917.948 kb on - strand, within ybjXat 918.050 kb on - strand, within ybjXat 918.059 kb on + strand, within ybjXat 918.271 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Δdbn_10
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914,702 - aqpZ b0875 0.18 +0.0
914,720 - aqpZ b0875 0.21 -3.8
914,757 + aqpZ b0875 0.26 -3.1
914,764 + aqpZ b0875 0.27 +0.1
914,767 - aqpZ b0875 0.28 +1.6
914,767 - aqpZ b0875 0.28 -3.7
914,784 + aqpZ b0875 0.30 -3.1
914,911 + aqpZ b0875 0.48 +1.4
914,941 + aqpZ b0875 0.53 +1.4
914,941 + aqpZ b0875 0.53 -0.9
914,998 + aqpZ b0875 0.61 -1.2
914,998 + aqpZ b0875 0.61 +1.9
915,193 + aqpZ b0875 0.89 -2.7
915,198 + aqpZ b0875 0.90 +0.1
915,198 + aqpZ b0875 0.90 +1.4
915,198 + aqpZ b0875 0.90 -1.8
915,203 + +1.0
915,203 + -0.9
915,203 + +0.1
915,203 + +1.2
915,206 - -0.3
915,206 - +1.6
915,206 - +2.4
915,206 - +2.6
915,206 - -3.5
915,226 - -0.4
915,226 - +0.4
915,279 + -1.6
915,279 + -1.5
915,437 - +0.7
915,461 - -0.7
915,461 - +1.9
915,473 - +2.0
915,570 - -0.4
915,616 - +0.8
915,616 - -2.2
915,616 - +0.9
915,616 - +1.1
915,647 + +0.7
915,647 - -2.4
915,700 + -1.9
915,705 - -2.5
915,710 + -2.4
915,783 - +3.1
915,794 + -1.9
915,817 + -2.8
915,817 + -0.3
915,841 + -0.3
915,909 + ybjD b0876 0.13 +0.4
915,970 - ybjD b0876 0.17 +0.3
916,056 - ybjD b0876 0.22 -0.1
916,212 + ybjD b0876 0.31 +1.8
916,330 + ybjD b0876 0.38 -3.3
916,334 + ybjD b0876 0.38 +0.6
916,374 - ybjD b0876 0.41 -4.2
916,463 + ybjD b0876 0.46 -0.4
916,463 + ybjD b0876 0.46 -1.8
916,540 - ybjD b0876 0.51 -2.9
916,546 + ybjD b0876 0.51 +0.9
916,717 - ybjD b0876 0.62 -1.8
916,717 - ybjD b0876 0.62 -1.8
916,823 + ybjD b0876 0.68 +1.3
916,823 + ybjD b0876 0.68 -0.2
916,869 + ybjD b0876 0.71 +0.1
916,869 + ybjD b0876 0.71 +1.2
916,989 + ybjD b0876 0.78 +0.2
917,422 - +0.8
917,467 + ybjX b0877 0.12 -0.9
917,467 + ybjX b0877 0.12 +0.3
917,528 + ybjX b0877 0.18 -0.9
917,528 + ybjX b0877 0.18 -0.8
917,643 - ybjX b0877 0.29 +0.8
917,658 - ybjX b0877 0.31 +1.4
917,658 - ybjX b0877 0.31 +1.2
917,775 + ybjX b0877 0.43 +0.9
917,828 + ybjX b0877 0.48 +0.4
917,838 + ybjX b0877 0.49 -1.1
917,878 + ybjX b0877 0.53 -2.6
917,878 + ybjX b0877 0.53 +0.9
917,891 - ybjX b0877 0.54 -0.5
917,948 - ybjX b0877 0.60 +0.5
918,050 - ybjX b0877 0.70 -0.1
918,059 + ybjX b0877 0.71 -0.4
918,271 + -0.3

Or see this region's nucleotide sequence