Strain Fitness in Pseudomonas putida KT2440 around PP_5378

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
6,128,666	+				-0.3
6,128,681	-				+0.8
6,128,736	-				-1.3
6,128,736	-				+0.7
6,128,772	+				-0.6
6,128,772	+				-0.8
6,128,834	+				-1.3
6,128,932	+		PP_5376	0.38	-0.0
6,128,932	+		PP_5376	0.38	-0.5
6,128,933	-		PP_5376	0.38	+0.7
6,128,933	-		PP_5376	0.38	-0.5
6,128,933	-		PP_5376	0.38	-1.6
6,128,993	+		PP_5376	0.56	+0.2
6,128,993	+		PP_5376	0.56	-0.0
6,128,993	+		PP_5376	0.56	-1.0
6,128,993	+		PP_5376	0.56	-0.7
6,128,993	+		PP_5376	0.56	-1.3
6,128,993	+		PP_5376	0.56	-0.4
6,128,993	+		PP_5376	0.56	-0.8
6,128,994	-		PP_5376	0.56	-0.8
6,128,994	-		PP_5376	0.56	+0.3
6,128,994	-				+1.5
6,129,065	-		PP_5376	0.78	-0.0
6,129,065	-		PP_5376	0.78	+1.9
6,129,065	-		PP_5376	0.78	-2.0
6,129,172	+				+0.5
6,129,173	-				+0.6
6,129,173	-				-0.0
6,129,218	+				+1.2
6,129,218	+				+0.5
6,129,218	+				+0.3
6,129,218	+				-0.2
6,129,219	-				+0.2
6,129,219	-				-0.3
6,129,219	-				+0.2
6,129,269	+		PP_5377	0.14	-0.8
6,129,269	+		PP_5377	0.14	+0.6
6,129,269	+		PP_5377	0.14	-0.6
6,129,269	+		PP_5377	0.14	+0.5
6,129,269	+		PP_5377	0.14	-1.2
6,129,269	+		PP_5377	0.14	+0.7
6,129,270	-		PP_5377	0.14	-0.2
6,129,270	-		PP_5377	0.14	+0.1
6,129,270	-		PP_5377	0.14	-1.5
6,129,270	-				+2.5
6,129,297	+		PP_5377	0.20	+0.2
6,129,298	-		PP_5377	0.20	-1.0
6,129,298	-		PP_5377	0.20	-0.8
6,129,475	-		PP_5377	0.59	-0.3
6,129,537	+		PP_5377	0.73	-0.7
6,129,569	+		PP_5377	0.80	-0.5
6,129,594	-		PP_5377	0.85	+0.6
6,129,594	-		PP_5377	0.85	+0.2
6,129,651	+				-1.1
6,129,651	+				-0.3
6,129,652	-				-0.1
6,129,668	+				+0.0
6,129,669	-				-0.6
6,129,669	-				-0.3
6,129,669	-				+0.4
6,129,724	+				+0.2
6,129,736	+		PP_5378	0.11	-0.3
6,129,939	-		PP_5378	0.37	+0.5
6,129,939	-		PP_5378	0.37	+0.4
6,129,939	-		PP_5378	0.37	+0.4
6,129,951	+		PP_5378	0.38	+0.1
6,129,951	+		PP_5378	0.38	+0.7
6,129,951	+		PP_5378	0.38	-0.9
6,129,952	-		PP_5378	0.39	+0.2
6,129,997	+		PP_5378	0.44	-0.6
6,130,008	+		PP_5378	0.46	-0.4
6,130,009	-		PP_5378	0.46	+0.3
6,130,049	-		PP_5378	0.51	+0.4
6,130,057	+		PP_5378	0.52	-0.1
6,130,066	+		PP_5378	0.53	-1.0
6,130,067	-		PP_5378	0.53	+0.3
6,130,100	+		PP_5378	0.57	-0.6
6,130,159	+		PP_5378	0.65	+1.0
6,130,159	+		PP_5378	0.65	-0.9
6,130,160	-				+2.5
6,130,160	-		PP_5378	0.65	-1.8
6,130,195	+		PP_5378	0.70	-1.3
6,130,195	+		PP_5378	0.70	+0.4
6,130,195	+		PP_5378	0.70	+0.0
6,130,195	+		PP_5378	0.70	+0.2
6,130,195	+		PP_5378	0.70	-0.7
6,130,195	+		PP_5378	0.70	+0.1
6,130,195	+		PP_5378	0.70	+1.0
6,130,196	-		PP_5378	0.70	-1.2
6,130,196	-		PP_5378	0.70	+0.5
6,130,203	+		PP_5378	0.71	-1.1
6,130,203	+		PP_5378	0.71	-0.1
6,130,203	+		PP_5378	0.71	-1.6
6,130,203	+		PP_5378	0.71	-0.4
6,130,204	-		PP_5378	0.71	+0.3
6,130,279	+		PP_5378	0.80	-1.8
6,130,280	-		PP_5378	0.80	-1.1
6,130,280	-		PP_5378	0.80	-1.8
6,130,352	+		PP_5378	0.90	+0.5
6,130,352	+		PP_5378	0.90	+0.6
6,130,388	-				-0.1
6,130,403	+				-0.5
6,130,403	+				-0.8
6,130,404	-				+0.6
6,130,404	-				-0.6
6,130,404	-				+1.4
6,130,406	+				+0.8
6,130,406	+				+0.2
6,130,406	+				-0.1
6,130,417	+				-0.9
6,130,417	+				-0.4
6,130,417	+				+0.2
6,130,418	-				+1.5
6,130,418	-				-0.3
6,130,418	-				-1.7
6,130,467	-				-0.6
6,130,497	-				-0.7
6,130,581	+		PP_5379	0.13	+1.2
6,130,581	+		PP_5379	0.13	+0.2
6,130,582	-		PP_5379	0.13	+0.7
6,130,586	+		PP_5379	0.13	-0.7
6,130,587	-		PP_5379	0.13	-0.9
6,130,660	+		PP_5379	0.20	+0.5
6,130,710	+		PP_5379	0.25	+0.8
6,130,710	+		PP_5379	0.25	-0.5
6,130,710	+		PP_5379	0.25	+1.1
6,130,711	-		PP_5379	0.25	+0.5
6,130,781	-		PP_5379	0.31	-1.2
6,130,782	+		PP_5379	0.31	+0.7
6,130,782	+		PP_5379	0.31	+0.5
6,130,783	-		PP_5379	0.32	-1.1
6,130,879	+		PP_5379	0.40	-0.5
6,130,880	-		PP_5379	0.41	-1.1
6,130,894	-		PP_5379	0.42	-0.7
6,131,032	-		PP_5379	0.55	-1.7
6,131,041	+		PP_5379	0.55	-0.4
6,131,041	+		PP_5379	0.55	-1.3
6,131,041	+		PP_5379	0.55	+0.2
6,131,041	+		PP_5379	0.55	-2.1
6,131,042	-		PP_5379	0.56	-0.6
6,131,042	-		PP_5379	0.56	-0.0
6,131,042	-		PP_5379	0.56	-0.3
6,131,042	-		PP_5379	0.56	-0.3
6,131,042	-		PP_5379	0.56	-0.9
6,131,042	-		PP_5379	0.56	+0.8
6,131,042	-		PP_5379	0.56	-0.8
6,131,045	+		PP_5379	0.56	+0.2
6,131,045	+		PP_5379	0.56	-0.8
6,131,045	+		PP_5379	0.56	-0.6
6,131,146	+		PP_5379	0.65	-0.1
6,131,146	+		PP_5379	0.65	-1.5
6,131,146	+		PP_5379	0.65	-0.7
6,131,152	+		PP_5379	0.66	-0.3
6,131,153	-		PP_5379	0.66	-0.1
6,131,329	+		PP_5379	0.82	+0.0
6,131,330	-		PP_5379	0.82	-1.1
6,131,330	-		PP_5379	0.82	+0.6