Strain Fitness in Pseudomonas putida KT2440 around PP_4621

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
5,242,302	+		PP_4620	0.32	-3.5
5,242,303	-		PP_4620	0.32	-2.3
5,242,303	-		PP_4620	0.32	-2.9
5,242,438	-		PP_4620	0.43	-2.1
5,242,575	+		PP_4620	0.53	-2.7
5,242,576	-		PP_4620	0.54	-1.8
5,242,707	+		PP_4620	0.64	-2.7
5,242,707	+		PP_4620	0.64	-0.5
5,242,707	+		PP_4620	0.64	-2.0
5,242,708	-		PP_4620	0.64	-2.0
5,242,708	-		PP_4620	0.64	-0.2
5,242,713	+		PP_4620	0.64	-2.9
5,242,713	+		PP_4620	0.64	-2.3
5,242,713	+		PP_4620	0.64	-1.7
5,242,714	-		PP_4620	0.64	-1.2
5,242,714	-		PP_4620	0.64	-3.0
5,242,714	-		PP_4620	0.64	-2.4
5,242,714	-		PP_4620	0.64	-2.0
5,242,783	-		PP_4620	0.70	-2.6
5,242,789	-		PP_4620	0.70	-1.1
5,242,795	-		PP_4620	0.70	-2.4
5,242,942	-		PP_4620	0.82	-1.7
5,243,153	-				-2.3
5,243,153	-				-2.7
5,243,153	-				-2.4
5,243,181	+				-3.3
5,243,227	+				-3.2
5,243,227	+				-2.9
5,243,227	+				-3.2
5,243,228	-				-1.8
5,243,232	+				-2.6
5,243,233	-				-1.0
5,243,446	-		PP_4621	0.20	-1.7
5,243,664	+		PP_4621	0.37	-2.6
5,243,664	+		PP_4621	0.37	-3.5
5,243,664	+		PP_4621	0.37	-3.0
5,243,665	-		PP_4621	0.37	-2.3
5,243,665	-		PP_4621	0.37	-3.1
5,243,670	+		PP_4621	0.38	-3.6
5,243,670	+		PP_4621	0.38	-2.7
5,243,756	+		PP_4621	0.44	-1.0
5,243,788	-		PP_4621	0.47	-2.2
5,243,788	-		PP_4621	0.47	-1.6
5,243,893	-		PP_4621	0.55	-2.1
5,244,082	-		PP_4621	0.69	-3.1
5,244,082	-		PP_4621	0.69	-1.8
5,244,087	+		PP_4621	0.70	-3.0
5,244,087	+		PP_4621	0.70	-2.0
5,244,087	+		PP_4621	0.70	+0.0
5,244,087	+		PP_4621	0.70	-3.2
5,244,088	-		PP_4621	0.70	-2.7
5,244,088	-		PP_4621	0.70	-2.9
5,244,088	-		PP_4621	0.70	-1.5
5,244,088	-		PP_4621	0.70	-1.9
5,244,088	-		PP_4621	0.70	-3.1
5,244,088	-		PP_4621	0.70	-3.6
5,244,088	-		PP_4621	0.70	-3.0
5,244,088	-		PP_4621	0.70	-2.6
5,244,289	-		PP_4621	0.85	-1.8
5,244,298	+		PP_4621	0.86	-2.1
5,244,355	-				-2.8
5,244,363	+				-3.6
5,244,529	+				-3.0
5,244,529	+				-1.8
5,244,556	+				-3.4
5,244,556	+				-3.1
5,244,556	+				-1.9
5,244,556	+				-2.5
5,244,557	-				-2.9
5,244,557	-				+2.9
5,244,557	-				-1.7
5,244,557	-				-1.0
5,244,557	-				-0.6
5,244,558	+				-1.3
5,244,703	+		PP_4622	0.13	+0.8
5,244,753	+		PP_4622	0.19	-1.6
5,244,964	+		PP_4622	0.44	+0.0
5,244,965	-		PP_4622	0.44	+1.8
5,244,965	-		PP_4622	0.44	+0.7
5,244,965	-		PP_4622	0.44	+0.8
5,245,062	+		PP_4622	0.56	+0.4
5,245,135	-		PP_4622	0.65	-0.3
5,245,391	+				-1.4
5,245,392	-				-1.9
5,245,440	+				+0.0
5,245,477	-				+0.4
5,245,477	-				+0.1