Strain Fitness in Pseudomonas putida KT2440 around PP_4496

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
5,110,348	-		PP_4495	0.75	-1.5
5,110,356	+		PP_4495	0.75	-2.8
5,110,356	+		PP_4495	0.75	-2.9
5,110,356	+		PP_4495	0.75	-0.1
5,110,356	+				+2.5
5,110,357	-		PP_4495	0.75	-2.4
5,110,357	-		PP_4495	0.75	-1.4
5,110,357	-		PP_4495	0.75	-1.7
5,110,357	-		PP_4495	0.75	-0.5
5,110,357	-		PP_4495	0.75	-1.2
5,110,357	-		PP_4495	0.75	-1.0
5,110,357	-		PP_4495	0.75	-1.2
5,110,396	+		PP_4495	0.78	-2.6
5,110,397	-		PP_4495	0.78	-0.1
5,110,397	-		PP_4495	0.78	-0.7
5,110,397	-		PP_4495	0.78	-2.1
5,110,398	+		PP_4495	0.78	-3.4
5,110,398	+		PP_4495	0.78	-1.7
5,110,398	+		PP_4495	0.78	-1.1
5,110,398	+		PP_4495	0.78	-1.7
5,110,398	+		PP_4495	0.78	-2.1
5,110,399	-		PP_4495	0.78	-1.8
5,110,399	-		PP_4495	0.78	-1.4
5,110,399	-		PP_4495	0.78	-2.5
5,110,399	-		PP_4495	0.78	-2.4
5,110,399	-		PP_4495	0.78	-1.5
5,110,399	-		PP_4495	0.78	-2.1
5,110,399	-		PP_4495	0.78	-3.1
5,110,449	+		PP_4495	0.82	-1.9
5,110,449	+		PP_4495	0.82	-2.4
5,110,449	+		PP_4495	0.82	-3.7
5,110,450	-		PP_4495	0.82	-1.4
5,110,450	-		PP_4495	0.82	-1.6
5,110,551	+		PP_4495	0.89	-1.3
5,110,673	+				-1.6
5,110,673	+				-1.4
5,110,674	-				-3.5
5,110,674	-				-0.9
5,110,674	-				-2.5
5,110,788	+				-0.6
5,110,875	-				-0.6
5,110,891	+				-2.7
5,110,891	+				-2.7
5,110,891	+				-3.4
5,110,891	+				-2.3
5,110,891	+				-0.0
5,110,892	-				-3.6
5,110,892	-				-1.2
5,110,892	-				-0.8
5,110,894	-				-1.4
5,110,993	+				-0.4
5,110,994	-				-0.8
5,111,067	+				-1.5
5,111,067	+				-3.1
5,111,067	+				-0.2
5,111,068	-				-2.1
5,111,201	-				-2.7
5,111,265	-				-1.1
5,111,342	+				+0.4
5,111,343	-				+0.2
5,111,343	-				+0.1
5,111,343	-				+1.0
5,111,346	-				-0.2
5,111,822	+				+1.5
5,111,951	-		PP_4496	0.57	+0.5
5,111,976	-		PP_4496	0.59	+2.5
5,112,162	-				+1.5
5,112,162	-		PP_4496	0.77	+0.5
5,112,383	+				+2.5
5,112,384	-				-1.0
5,112,430	-				-0.1
5,112,430	-				-0.5
5,112,513	+				-0.6
5,112,591	+				+0.9
5,112,592	-				+1.5
5,112,623	-				+0.5
5,113,069	+		PP_4497	0.51	-0.3
5,113,069	+		PP_4497	0.51	+0.9
5,113,069	+		PP_4497	0.51	+0.2
5,113,070	-		PP_4497	0.51	+0.6
5,113,070	-		PP_4497	0.51	+0.6
5,113,131	+		PP_4497	0.59	+0.9
5,113,215	+		PP_4497	0.70	+0.4
5,113,215	+		PP_4497	0.70	-0.2
5,113,215	+		PP_4497	0.70	-1.0
5,113,215	+		PP_4497	0.70	+0.0
5,113,215	+		PP_4497	0.70	+0.9
5,113,216	-		PP_4497	0.70	+0.3
5,113,356	+		PP_4497	0.88	-0.0
5,113,357	-		PP_4497	0.89	-0.9