Strain Fitness in Pseudomonas putida KT2440 around PP_4495

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
5,108,337	-				+1.5
5,108,337	-				+0.1
5,108,337	-				-0.9
5,108,391	+		PP_4494	0.14	-0.1
5,108,391	+		PP_4494	0.14	-1.8
5,108,392	-		PP_4494	0.14	-0.2
5,108,392	-		PP_4494	0.14	+0.6
5,108,448	+		PP_4494	0.21	-0.9
5,108,449	-		PP_4494	0.21	-0.6
5,108,449	-		PP_4494	0.21	+0.4
5,108,475	-		PP_4494	0.24	+0.4
5,108,537	+		PP_4494	0.31	+1.2
5,108,538	-		PP_4494	0.31	+1.7
5,108,550	+		PP_4494	0.32	-0.4
5,108,591	-		PP_4494	0.37	+1.1
5,108,591	-		PP_4494	0.37	-0.5
5,108,621	+		PP_4494	0.40	+0.4
5,108,621	+		PP_4494	0.40	-1.0
5,108,962	-		PP_4494	0.79	+0.1
5,108,997	+		PP_4494	0.83	+0.1
5,108,998	-		PP_4494	0.83	+0.3
5,108,998	-		PP_4494	0.83	+1.4
5,109,032	+		PP_4494	0.87	-0.0
5,109,032	+		PP_4494	0.87	+0.9
5,109,032	+		PP_4494	0.87	+0.6
5,109,032	+		PP_4494	0.87	-0.5
5,109,032	+		PP_4494	0.87	-0.7
5,109,032	+		PP_4494	0.87	+0.4
5,109,032	+		PP_4494	0.87	+0.4
5,109,032	+		PP_4494	0.87	-1.0
5,109,033	-		PP_4494	0.87	-0.1
5,109,033	-		PP_4494	0.87	-1.4
5,109,033	-		PP_4494	0.87	-2.7
5,109,068	+				+0.8
5,109,068	+				-1.3
5,109,068	+				+1.5
5,109,071	+				-1.1
5,109,071	+				-1.4
5,109,072	-				+0.4
5,109,080	+				-0.3
5,109,081	-				+0.5
5,109,191	+				-0.7
5,109,272	-				-1.5
5,109,288	+				-0.5
5,109,288	+				+0.4
5,109,288	+				+0.8
5,109,288	+				-1.2
5,109,289	-				-0.4
5,109,289	-				-0.2
5,109,289	-				-1.9
5,109,348	+				-3.3
5,109,348	+				-2.2
5,109,348	+				-0.6
5,109,348	+				-3.3
5,109,348	+				-2.9
5,109,348	+				-2.2
5,109,349	-				-2.6
5,109,349	-				-1.6
5,109,349	-				-3.0
5,109,349	-				-2.6
5,109,349	-				-1.7
5,109,349	-				-1.6
5,109,349	-				-2.1
5,109,387	+				-3.5
5,109,387	+				-1.7
5,109,388	-				-2.0
5,109,388	-				-1.8
5,109,388	-				-2.4
5,109,388	-				-1.8
5,109,388	-				-2.1
5,109,459	+		PP_4495	0.12	-3.2
5,109,459	+		PP_4495	0.12	-2.1
5,109,459	+		PP_4495	0.12	-2.4
5,109,459	+		PP_4495	0.12	-3.6
5,109,459	+		PP_4495	0.12	-3.2
5,109,459	+		PP_4495	0.12	-2.6
5,109,460	-		PP_4495	0.12	-1.6
5,109,460	-		PP_4495	0.12	-2.0
5,109,460	-		PP_4495	0.12	-2.2
5,109,460	-		PP_4495	0.12	-1.6
5,109,460	-		PP_4495	0.12	-1.9
5,109,460	-		PP_4495	0.12	-1.3
5,109,543	+		PP_4495	0.18	-2.0
5,109,543	+		PP_4495	0.18	-1.6
5,109,625	-		PP_4495	0.24	-2.3
5,109,765	+		PP_4495	0.34	-2.3
5,109,780	+		PP_4495	0.35	-2.2
5,109,781	-		PP_4495	0.35	-1.6
5,109,879	+		PP_4495	0.42	-3.5
5,109,978	+		PP_4495	0.49	-1.6
5,109,979	-		PP_4495	0.49	-3.4
5,110,188	+		PP_4495	0.63	+0.5
5,110,189	-		PP_4495	0.64	-1.7
5,110,348	-		PP_4495	0.75	-1.5
5,110,356	+		PP_4495	0.75	-2.8
5,110,356	+		PP_4495	0.75	-2.9
5,110,356	+		PP_4495	0.75	-0.1
5,110,356	+				+2.5
5,110,357	-		PP_4495	0.75	-2.4
5,110,357	-		PP_4495	0.75	-1.4
5,110,357	-		PP_4495	0.75	-1.7
5,110,357	-		PP_4495	0.75	-0.5
5,110,357	-		PP_4495	0.75	-1.2
5,110,357	-		PP_4495	0.75	-1.0
5,110,357	-		PP_4495	0.75	-1.2
5,110,396	+		PP_4495	0.78	-2.6
5,110,397	-		PP_4495	0.78	-0.1
5,110,397	-		PP_4495	0.78	-0.7
5,110,397	-		PP_4495	0.78	-2.1
5,110,398	+		PP_4495	0.78	-3.4
5,110,398	+		PP_4495	0.78	-1.7
5,110,398	+		PP_4495	0.78	-1.1
5,110,398	+		PP_4495	0.78	-1.7
5,110,398	+		PP_4495	0.78	-2.1
5,110,399	-		PP_4495	0.78	-1.8
5,110,399	-		PP_4495	0.78	-1.4
5,110,399	-		PP_4495	0.78	-2.5
5,110,399	-		PP_4495	0.78	-2.4
5,110,399	-		PP_4495	0.78	-1.5
5,110,399	-		PP_4495	0.78	-2.1
5,110,399	-		PP_4495	0.78	-3.1
5,110,449	+		PP_4495	0.82	-1.9
5,110,449	+		PP_4495	0.82	-2.4
5,110,449	+		PP_4495	0.82	-3.7
5,110,450	-		PP_4495	0.82	-1.4
5,110,450	-		PP_4495	0.82	-1.6
5,110,551	+		PP_4495	0.89	-1.3
5,110,673	+				-1.6
5,110,673	+				-1.4
5,110,674	-				-3.5
5,110,674	-				-0.9
5,110,674	-				-2.5
5,110,788	+				-0.6
5,110,875	-				-0.6
5,110,891	+				-2.7
5,110,891	+				-2.7
5,110,891	+				-3.4
5,110,891	+				-2.3
5,110,891	+				-0.0
5,110,892	-				-3.6
5,110,892	-				-1.2
5,110,892	-				-0.8
5,110,894	-				-1.4
5,110,993	+				-0.4
5,110,994	-				-0.8
5,111,067	+				-1.5
5,111,067	+				-3.1
5,111,067	+				-0.2
5,111,068	-				-2.1
5,111,201	-				-2.7
5,111,265	-				-1.1
5,111,342	+				+0.4
5,111,343	-				+0.2
5,111,343	-				+0.1
5,111,343	-				+1.0
5,111,346	-				-0.2