Strain Fitness in Pseudomonas putida KT2440 around PP_4390

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
4,981,729	+		PP_4388	0.83	-2.5
4,981,729	+		PP_4388	0.83	-1.4
4,981,729	+		PP_4388	0.83	-1.3
4,981,730	-		PP_4388	0.83	-1.9
4,981,824	+				-0.6
4,981,825	-				-1.9
4,981,920	+				-1.6
4,981,920	+				-1.5
4,981,921	-				-1.2
4,981,921	-				-3.3
4,981,955	+				-1.3
4,981,955	+				-1.4
4,981,956	-				-3.1
4,981,956	-				-1.0
4,981,982	-				-1.1
4,982,060	+		PP_4389	0.11	-3.3
4,982,149	+		PP_4389	0.24	-0.8
4,982,149	+		PP_4389	0.24	-1.2
4,982,149	+		PP_4389	0.24	-1.1
4,982,149	+		PP_4389	0.24	-1.5
4,982,150	-		PP_4389	0.24	-1.1
4,982,150	-		PP_4389	0.24	-0.5
4,982,198	+		PP_4389	0.31	-0.6
4,982,199	-		PP_4389	0.31	-1.9
4,982,199	-		PP_4389	0.31	-1.5
4,982,266	+		PP_4389	0.41	-1.0
4,982,267	-		PP_4389	0.41	-1.3
4,982,428	+		PP_4389	0.64	-2.2
4,982,428	+		PP_4389	0.64	-1.7
4,982,429	-		PP_4389	0.64	-1.8
4,982,641	+				-1.0
4,982,642	-				-1.2
4,982,642	-				-1.3
4,982,642	-				-1.3
4,982,661	-				-0.8
4,982,692	+				-1.2
4,982,692	+				-2.5
4,982,692	+				-1.0
4,982,692	+				-4.0
4,982,692	+				-1.6
4,982,693	-				+1.4
4,982,693	-				-1.0
4,982,821	+		PP_4390	0.29	-2.3
4,982,822	-		PP_4390	0.29	-2.4
4,982,825	-		PP_4390	0.30	-1.7
4,982,830	+		PP_4390	0.31	-1.9
4,982,830	+		PP_4390	0.31	-1.2
4,982,830	+		PP_4390	0.31	-1.4
4,982,831	-		PP_4390	0.31	-1.8
4,982,867	-		PP_4390	0.39	-0.9
4,982,907	+		PP_4390	0.48	-2.1
4,982,907	+		PP_4390	0.48	-2.0
4,982,907	+		PP_4390	0.48	-3.3
4,982,907	+		PP_4390	0.48	-2.8
4,982,908	-				+0.5
4,983,013	+		PP_4390	0.72	-1.5
4,983,014	-		PP_4390	0.72	-0.8
4,983,178	+				-1.4
4,983,228	+		PP_4391	0.21	-1.1
4,983,229	-		PP_4391	0.22	-1.7
4,983,229	-		PP_4391	0.22	-1.6
4,983,294	+		PP_4391	0.37	-0.9
4,983,295	-		PP_4391	0.38	-1.7
4,983,295	-		PP_4391	0.38	-0.1
4,983,438	+		PP_4391	0.73	-1.4
4,983,438	+		PP_4391	0.73	-2.5
4,983,438	+		PP_4391	0.73	-2.6
4,983,439	-		PP_4391	0.73	-2.5
4,983,439	-		PP_4391	0.73	-3.1
4,983,599	-				-0.5
4,983,599	-				-1.3
4,983,631	+				-1.7
4,983,828	-				-1.2
4,983,833	+				+0.2
4,983,833	+				+0.5
4,983,833	+				+1.7
4,983,833	+				+0.2
4,983,834	-				-1.0
4,983,834	-				+1.5
4,983,834	-				+1.1
4,983,873	+				+0.6
4,983,874	-				-0.4
4,983,874	-				+0.7
4,983,874	-				+0.5
4,983,874	-				-0.2
4,983,885	+				-0.3
4,983,885	+				-2.4
4,983,886	-				-0.8
4,983,966	+		PP_4392	0.11	-2.9
4,983,967	-		PP_4392	0.11	-1.8
4,983,967	-		PP_4392	0.11	-2.3
4,984,032	+		PP_4392	0.19	-1.7
4,984,032	+		PP_4392	0.19	-1.6
4,984,083	+		PP_4392	0.25	-2.1
4,984,083	+		PP_4392	0.25	+0.8
4,984,084	-		PP_4392	0.26	-2.5
4,984,084	-		PP_4392	0.26	-0.6
4,984,084	-		PP_4392	0.26	-2.6
4,984,084	-		PP_4392	0.26	-1.0
4,984,084	-		PP_4392	0.26	-0.6