Strain Fitness in Pseudomonas putida KT2440 around PP_4367

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
4,955,781	+		PP_4366	0.29	-2.5
4,955,781	+		PP_4366	0.29	-2.2
4,955,782	-		PP_4366	0.29	-0.9
4,955,782	-		PP_4366	0.29	-0.9
4,955,983	-		PP_4366	0.44	-1.4
4,956,003	+		PP_4366	0.45	-2.0
4,956,003	+		PP_4366	0.45	-0.7
4,956,003	+		PP_4366	0.45	-0.1
4,956,003	+		PP_4366	0.45	-1.2
4,956,003	+		PP_4366	0.45	-1.6
4,956,003	+		PP_4366	0.45	-1.6
4,956,004	-		PP_4366	0.45	-3.2
4,956,004	-		PP_4366	0.45	-2.7
4,956,004	-		PP_4366	0.45	-1.7
4,956,197	-		PP_4366	0.59	-0.5
4,956,248	-		PP_4366	0.63	-0.4
4,956,263	-		PP_4366	0.64	-2.6
4,956,279	+		PP_4366	0.65	-0.7
4,956,296	-		PP_4366	0.67	-1.5
4,956,485	-		PP_4366	0.80	-1.8
4,956,485	-		PP_4366	0.80	-0.9
4,956,559	-		PP_4366	0.86	-2.1
4,956,637	+				-1.5
4,956,638	-				-1.5
4,956,638	-				-2.0
4,956,693	+				-2.4
4,956,693	+				-1.0
4,956,694	-				-1.3
4,957,086	+		PP_4367	0.45	-1.6
4,957,087	-		PP_4367	0.46	-2.4
4,957,303	+		PP_4367	0.73	-0.6
4,957,304	-		PP_4367	0.73	-2.3
4,957,304	-		PP_4367	0.73	-2.6
4,957,304	-		PP_4367	0.73	+0.0
4,957,304	-		PP_4367	0.73	-1.0
4,957,561	+				-0.9
4,957,561	+				-2.7
4,957,562	-				+1.8
4,957,562	-				+0.4
4,957,562	-				+0.9
4,957,562	-				+0.6
4,957,562	-				+1.9
4,957,643	+				-2.5
4,957,677	-				-0.3
4,957,677	-				+0.8
4,957,677	-				+0.6
4,957,681	+				-1.1
4,957,681	+				-0.9
4,957,681	+				-2.0
4,957,681	+				-1.0
4,957,681	+				-2.6
4,957,681	+				-1.0
4,957,681	+				-2.8
4,957,682	-				+0.3
4,957,682	-				-0.6
4,957,682	-				+1.4
4,957,682	-				-0.5
4,957,682	-				+0.8
4,957,682	-				-0.9
4,957,682	-				-0.5
4,957,682	-				+0.4
4,958,094	-		PP_4368	0.41	+0.1
4,958,094	-		PP_4368	0.41	-0.9
4,958,275	+		PP_4368	0.58	-0.9
4,958,275	+		PP_4368	0.58	-2.7
4,958,311	+		PP_4368	0.62	-1.0
4,958,372	+		PP_4368	0.68	-1.3
4,958,452	+		PP_4368	0.76	-0.3
4,958,452	+		PP_4368	0.76	-3.3
4,958,452	+		PP_4368	0.76	-3.6
4,958,453	-		PP_4368	0.76	-2.4
4,958,453	-		PP_4368	0.76	-3.1
4,958,453	-		PP_4368	0.76	-1.1
4,958,453	-		PP_4368	0.76	-1.8