Strain Fitness in Pseudomonas putida KT2440 around PP_4332

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
4,921,995	+		PP_4330	0.90	+0.0
4,921,995	+		PP_4330	0.90	-0.5
4,921,996	-		PP_4330	0.90	+0.5
4,922,043	+				-0.3
4,922,062	-				-1.7
4,922,108	-				+0.2
4,922,169	+				-1.5
4,922,169	+				-0.4
4,922,170	-				+1.5
4,922,198	+				-0.6
4,922,199	-				+0.4
4,922,199	-				-0.4
4,922,287	+				-0.1
4,922,288	-				+1.6
4,922,458	+		PP_4331	0.19	-1.1
4,922,610	+		PP_4331	0.58	-0.5
4,922,611	-		PP_4331	0.58	-2.4
4,922,706	+		PP_4331	0.82	+0.1
4,922,706	+		PP_4331	0.82	-0.1
4,922,706	+		PP_4331	0.82	-0.8
4,922,707	-		PP_4331	0.82	-0.3
4,922,707	-		PP_4331	0.82	-0.8
4,922,707	-		PP_4331	0.82	-1.2
4,922,707	-		PP_4331	0.82	-0.4
4,922,707	-		PP_4331	0.82	-0.7
4,922,768	+				-2.1
4,922,769	-				-0.1
4,922,877	+		PP_4332	0.21	-1.9
4,923,106	+		PP_4332	0.68	-2.2
4,923,106	+		PP_4332	0.68	-1.5
4,923,107	-		PP_4332	0.69	+0.0
4,923,206	+		PP_4332	0.89	-1.1
4,923,206	+		PP_4332	0.89	-0.6
4,923,263	+				-0.5
4,923,502	-		PP_4333	0.23	-0.1
4,923,502	-		PP_4333	0.23	+1.4
4,923,502	-		PP_4333	0.23	+0.3
4,923,522	+		PP_4333	0.25	-2.2
4,923,522	+		PP_4333	0.25	-2.4
4,923,522	+		PP_4333	0.25	-1.5
4,923,523	-		PP_4333	0.25	+0.5
4,923,678	+		PP_4333	0.42	-0.6
4,923,678	+		PP_4333	0.42	-0.2
4,923,678	+		PP_4333	0.42	-2.9
4,923,678	+		PP_4333	0.42	-0.9
4,923,678	+		PP_4333	0.42	-3.1
4,923,679	-		PP_4333	0.42	-2.1
4,923,794	+		PP_4333	0.55	-0.9
4,923,950	+		PP_4333	0.73	-2.1
4,924,144	-				-0.8
4,924,221	-				+0.5
4,924,221	-				+0.3
4,924,251	-				-0.1