Strain Fitness in Pseudomonas putida KT2440 around PP_4190

Experiment: L-Phenylalanine 5 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_4189 and PP_4190 are separated by 246 nucleotidesPP_4190 and PP_4191 are separated by 11 nucleotides PP_4189: PP_4189 - 2-oxoglutarate decarboxylase, thiamine-requiring E1 subunit, at 4,732,803 to 4,735,634 _4189 PP_4190: PP_4190 - succinate dehydrogenase iron-sulfur subunit, at 4,735,881 to 4,736,585 _4190 PP_4191: PP_4191 - succinate dehydrogenase flavoprotein subunit, at 4,736,597 to 4,738,369 _4191 Position (kb) 4735 4736 4737Strain fitness (log2 ratio) -1 0 1 2at 4735.132 kb on + strandat 4735.328 kb on - strandat 4735.461 kb on + strandat 4735.547 kb on - strandat 4735.570 kb on + strandat 4735.783 kb on - strandat 4735.787 kb on - strandat 4735.859 kb on - strandat 4735.868 kb on - strandat 4735.868 kb on - strandat 4735.880 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine 5 mM (C)
remove
4,735,132 + +2.5
4,735,328 - +2.5
4,735,461 + +1.5
4,735,547 - +2.5
4,735,570 + +2.5
4,735,783 - +1.9
4,735,787 - -0.5
4,735,859 - +1.5
4,735,868 - +0.9
4,735,868 - +0.2
4,735,880 - +0.2

Or see this region's nucleotide sequence