Strain Fitness in Pseudomonas putida KT2440 around PP_4116

Experiment: L-Phenylalanine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4115 and PP_5659 are separated by 127 nucleotidesPP_5659 and PP_4116 are separated by 30 nucleotidesPP_4116 and PP_4118 are separated by 257 nucleotides PP_4115: PP_4115 - conserved exported protein of unknown function, at 4,652,229 to 4,653,032 _4115 PP_5659: PP_5659 - protein of unknown function, at 4,653,160 to 4,653,492 _5659 PP_4116: PP_4116 - isocitrate lyase, at 4,653,523 to 4,654,848 _4116 PP_4118: PP_4118 - putative Membrane protein, at 4,655,106 to 4,655,801 _4118 Position (kb) 4653 4654 4655Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4652.610 kb on + strandat 4652.647 kb on + strand, within PP_4115at 4652.648 kb on - strand, within PP_4115at 4652.725 kb on - strand, within PP_4115at 4652.775 kb on + strand, within PP_4115at 4652.775 kb on + strand, within PP_4115at 4652.775 kb on + strand, within PP_4115at 4652.775 kb on + strand, within PP_4115at 4652.775 kb on + strandat 4652.775 kb on + strand, within PP_4115at 4652.819 kb on - strand, within PP_4115at 4652.973 kb on + strandat 4652.973 kb on + strandat 4652.973 kb on + strandat 4652.974 kb on - strandat 4652.974 kb on - strandat 4652.974 kb on - strandat 4652.974 kb on - strandat 4653.089 kb on + strandat 4653.090 kb on - strandat 4653.102 kb on + strandat 4653.103 kb on - strandat 4653.103 kb on - strandat 4653.103 kb on - strandat 4653.103 kb on - strandat 4653.103 kb on - strandat 4653.103 kb on - strandat 4653.105 kb on + strandat 4653.241 kb on + strand, within PP_5659at 4653.242 kb on - strand, within PP_5659at 4653.243 kb on + strand, within PP_5659at 4653.243 kb on + strand, within PP_5659at 4653.244 kb on - strand, within PP_5659at 4653.490 kb on + strandat 4653.603 kb on + strandat 4653.607 kb on + strandat 4653.607 kb on + strandat 4653.608 kb on - strandat 4653.779 kb on + strand, within PP_4116at 4653.779 kb on + strand, within PP_4116at 4653.779 kb on + strand, within PP_4116at 4653.780 kb on - strand, within PP_4116at 4653.811 kb on + strand, within PP_4116at 4653.811 kb on + strand, within PP_4116at 4653.811 kb on + strand, within PP_4116at 4653.811 kb on + strand, within PP_4116at 4653.811 kb on + strand, within PP_4116at 4653.811 kb on + strand, within PP_4116at 4653.812 kb on - strand, within PP_4116at 4653.812 kb on - strand, within PP_4116at 4653.812 kb on - strand, within PP_4116at 4653.812 kb on - strandat 4653.812 kb on - strand, within PP_4116at 4653.812 kb on - strand, within PP_4116at 4653.862 kb on + strand, within PP_4116at 4653.862 kb on + strand, within PP_4116at 4653.880 kb on + strand, within PP_4116at 4653.985 kb on + strand, within PP_4116at 4653.985 kb on + strand, within PP_4116at 4654.051 kb on + strand, within PP_4116at 4654.052 kb on - strand, within PP_4116at 4654.221 kb on - strand, within PP_4116at 4654.333 kb on + strand, within PP_4116at 4654.333 kb on + strand, within PP_4116at 4654.333 kb on + strand, within PP_4116at 4654.334 kb on - strand, within PP_4116at 4654.334 kb on - strand, within PP_4116at 4654.471 kb on + strand, within PP_4116at 4654.492 kb on + strand, within PP_4116at 4654.492 kb on + strand, within PP_4116at 4654.493 kb on - strand, within PP_4116at 4654.579 kb on + strand, within PP_4116at 4654.651 kb on + strand, within PP_4116at 4654.675 kb on + strand, within PP_4116at 4654.676 kb on - strand, within PP_4116at 4654.676 kb on - strand, within PP_4116at 4654.676 kb on - strand, within PP_4116at 4654.849 kb on + strandat 4654.850 kb on - strandat 4654.973 kb on + strandat 4654.974 kb on - strandat 4654.974 kb on - strandat 4654.995 kb on + strandat 4654.995 kb on + strandat 4654.995 kb on + strandat 4654.995 kb on + strandat 4654.996 kb on - strandat 4655.105 kb on + strandat 4655.105 kb on + strandat 4655.106 kb on - strandat 4655.106 kb on - strandat 4655.106 kb on - strandat 4655.106 kb on - strandat 4655.190 kb on + strand, within PP_4118at 4655.191 kb on - strand, within PP_4118at 4655.191 kb on - strand, within PP_4118at 4655.191 kb on - strand, within PP_4118at 4655.191 kb on - strand, within PP_4118at 4655.192 kb on + strand, within PP_4118at 4655.192 kb on + strand, within PP_4118at 4655.192 kb on + strand, within PP_4118at 4655.192 kb on + strand, within PP_4118at 4655.192 kb on + strand, within PP_4118at 4655.192 kb on + strand, within PP_4118at 4655.192 kb on + strand, within PP_4118at 4655.192 kb on + strand, within PP_4118at 4655.192 kb on + strand, within PP_4118at 4655.192 kb on + strand, within PP_4118at 4655.192 kb on + strandat 4655.192 kb on + strand, within PP_4118at 4655.192 kb on + strand, within PP_4118at 4655.192 kb on + strand, within PP_4118at 4655.192 kb on + strand, within PP_4118at 4655.193 kb on - strand, within PP_4118at 4655.193 kb on - strand, within PP_4118at 4655.193 kb on - strand, within PP_4118at 4655.193 kb on - strand, within PP_4118at 4655.193 kb on - strand, within PP_4118at 4655.193 kb on - strandat 4655.193 kb on - strand, within PP_4118at 4655.193 kb on - strand, within PP_4118at 4655.193 kb on - strand, within PP_4118at 4655.193 kb on - strand, within PP_4118at 4655.193 kb on - strand, within PP_4118at 4655.193 kb on - strand, within PP_4118at 4655.193 kb on - strand, within PP_4118at 4655.193 kb on - strand, within PP_4118at 4655.194 kb on + strand, within PP_4118at 4655.194 kb on + strand, within PP_4118at 4655.194 kb on + strandat 4655.194 kb on + strand, within PP_4118at 4655.194 kb on + strand, within PP_4118at 4655.194 kb on + strand, within PP_4118at 4655.194 kb on + strand, within PP_4118at 4655.194 kb on + strand, within PP_4118at 4655.194 kb on + strand, within PP_4118at 4655.194 kb on + strand, within PP_4118at 4655.194 kb on + strand, within PP_4118at 4655.194 kb on + strand, within PP_4118at 4655.194 kb on + strand, within PP_4118at 4655.194 kb on + strand, within PP_4118at 4655.194 kb on + strand, within PP_4118at 4655.194 kb on + strand, within PP_4118at 4655.195 kb on - strand, within PP_4118at 4655.195 kb on - strand, within PP_4118at 4655.195 kb on - strand, within PP_4118at 4655.195 kb on - strand, within PP_4118at 4655.195 kb on - strand, within PP_4118at 4655.195 kb on - strand, within PP_4118at 4655.195 kb on - strand, within PP_4118at 4655.195 kb on - strand, within PP_4118at 4655.195 kb on - strand, within PP_4118at 4655.195 kb on - strand, within PP_4118at 4655.195 kb on - strand, within PP_4118at 4655.195 kb on - strand, within PP_4118at 4655.195 kb on - strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.197 kb on - strand, within PP_4118at 4655.197 kb on - strand, within PP_4118at 4655.197 kb on - strand, within PP_4118at 4655.197 kb on - strand, within PP_4118at 4655.197 kb on - strand, within PP_4118at 4655.197 kb on - strand, within PP_4118at 4655.197 kb on - strand, within PP_4118at 4655.197 kb on - strand, within PP_4118at 4655.197 kb on - strand, within PP_4118at 4655.197 kb on - strand, within PP_4118at 4655.197 kb on - strand, within PP_4118at 4655.197 kb on - strand, within PP_4118at 4655.197 kb on - strand, within PP_4118at 4655.197 kb on - strand, within PP_4118at 4655.296 kb on - strand, within PP_4118at 4655.412 kb on + strand, within PP_4118at 4655.412 kb on + strand, within PP_4118at 4655.413 kb on - strand, within PP_4118at 4655.413 kb on - strand, within PP_4118at 4655.413 kb on - strand, within PP_4118at 4655.413 kb on - strand, within PP_4118at 4655.413 kb on - strand, within PP_4118at 4655.425 kb on - strand, within PP_4118at 4655.436 kb on - strand, within PP_4118at 4655.501 kb on - strand, within PP_4118at 4655.685 kb on + strand, within PP_4118at 4655.686 kb on - strand, within PP_4118at 4655.762 kb on - strandat 4655.828 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine 5 mM (C)
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4,652,610 + +1.9
4,652,647 + PP_4115 0.52 +0.9
4,652,648 - PP_4115 0.52 +0.4
4,652,725 - PP_4115 0.62 -0.5
4,652,775 + PP_4115 0.68 +0.2
4,652,775 + PP_4115 0.68 -0.3
4,652,775 + PP_4115 0.68 -0.3
4,652,775 + PP_4115 0.68 +0.3
4,652,775 + +0.9
4,652,775 + PP_4115 0.68 -1.2
4,652,819 - PP_4115 0.73 -1.5
4,652,973 + +0.0
4,652,973 + +0.3
4,652,973 + -0.2
4,652,974 - -0.2
4,652,974 - +0.6
4,652,974 - -2.0
4,652,974 - -1.3
4,653,089 + +0.1
4,653,090 - -0.4
4,653,102 + +2.5
4,653,103 - -0.1
4,653,103 - -0.1
4,653,103 - -1.0
4,653,103 - -0.1
4,653,103 - +0.1
4,653,103 - -1.5
4,653,105 + +1.1
4,653,241 + PP_5659 0.24 -1.4
4,653,242 - PP_5659 0.25 -0.3
4,653,243 + PP_5659 0.25 -0.5
4,653,243 + PP_5659 0.25 -1.0
4,653,244 - PP_5659 0.25 -1.0
4,653,490 + -1.1
4,653,603 + -0.7
4,653,607 + -0.5
4,653,607 + -1.6
4,653,608 - +0.5
4,653,779 + PP_4116 0.19 -2.6
4,653,779 + PP_4116 0.19 -1.9
4,653,779 + PP_4116 0.19 -1.2
4,653,780 - PP_4116 0.19 -1.6
4,653,811 + PP_4116 0.22 -0.6
4,653,811 + PP_4116 0.22 -1.1
4,653,811 + PP_4116 0.22 -0.3
4,653,811 + PP_4116 0.22 -1.0
4,653,811 + PP_4116 0.22 -1.6
4,653,811 + PP_4116 0.22 -0.7
4,653,812 - PP_4116 0.22 -1.5
4,653,812 - PP_4116 0.22 +0.1
4,653,812 - PP_4116 0.22 -1.1
4,653,812 - +1.5
4,653,812 - PP_4116 0.22 -2.0
4,653,812 - PP_4116 0.22 +0.3
4,653,862 + PP_4116 0.26 -0.9
4,653,862 + PP_4116 0.26 -2.0
4,653,880 + PP_4116 0.27 +0.8
4,653,985 + PP_4116 0.35 -2.6
4,653,985 + PP_4116 0.35 +0.5
4,654,051 + PP_4116 0.40 -0.6
4,654,052 - PP_4116 0.40 -1.1
4,654,221 - PP_4116 0.53 -2.3
4,654,333 + PP_4116 0.61 -0.3
4,654,333 + PP_4116 0.61 -0.3
4,654,333 + PP_4116 0.61 -1.4
4,654,334 - PP_4116 0.61 -0.4
4,654,334 - PP_4116 0.61 -0.1
4,654,471 + PP_4116 0.71 -0.7
4,654,492 + PP_4116 0.73 -1.1
4,654,492 + PP_4116 0.73 -0.8
4,654,493 - PP_4116 0.73 +0.3
4,654,579 + PP_4116 0.80 +0.6
4,654,651 + PP_4116 0.85 -2.4
4,654,675 + PP_4116 0.87 -2.6
4,654,676 - PP_4116 0.87 -0.7
4,654,676 - PP_4116 0.87 -1.5
4,654,676 - PP_4116 0.87 -2.2
4,654,849 + -0.2
4,654,850 - +0.2
4,654,973 + +0.2
4,654,974 - -0.5
4,654,974 - -0.0
4,654,995 + -0.8
4,654,995 + -0.2
4,654,995 + -0.1
4,654,995 + -1.7
4,654,996 - +0.4
4,655,105 + -1.2
4,655,105 + -0.6
4,655,106 - -0.6
4,655,106 - -0.9
4,655,106 - +1.5
4,655,106 - -2.9
4,655,190 + PP_4118 0.12 -0.7
4,655,191 - PP_4118 0.12 +0.7
4,655,191 - PP_4118 0.12 -0.5
4,655,191 - PP_4118 0.12 +0.5
4,655,191 - PP_4118 0.12 -1.8
4,655,192 + PP_4118 0.12 +1.1
4,655,192 + PP_4118 0.12 -0.0
4,655,192 + PP_4118 0.12 +0.2
4,655,192 + PP_4118 0.12 -0.3
4,655,192 + PP_4118 0.12 +0.6
4,655,192 + PP_4118 0.12 +1.1
4,655,192 + PP_4118 0.12 +1.2
4,655,192 + PP_4118 0.12 -1.0
4,655,192 + PP_4118 0.12 -1.2
4,655,192 + PP_4118 0.12 +0.3
4,655,192 + -0.1
4,655,192 + PP_4118 0.12 -1.0
4,655,192 + PP_4118 0.12 +1.4
4,655,192 + PP_4118 0.12 -0.0
4,655,192 + PP_4118 0.12 +0.0
4,655,193 - PP_4118 0.12 -0.2
4,655,193 - PP_4118 0.12 -0.3
4,655,193 - PP_4118 0.12 -0.9
4,655,193 - PP_4118 0.12 -0.1
4,655,193 - PP_4118 0.12 -0.2
4,655,193 - +0.5
4,655,193 - PP_4118 0.12 +1.2
4,655,193 - PP_4118 0.12 +0.6
4,655,193 - PP_4118 0.12 -1.2
4,655,193 - PP_4118 0.12 -0.2
4,655,193 - PP_4118 0.12 -0.3
4,655,193 - PP_4118 0.12 +0.8
4,655,193 - PP_4118 0.12 -1.8
4,655,193 - PP_4118 0.12 -0.4
4,655,194 + PP_4118 0.13 +1.7
4,655,194 + PP_4118 0.13 -0.8
4,655,194 + +0.9
4,655,194 + PP_4118 0.13 -0.6
4,655,194 + PP_4118 0.13 -1.1
4,655,194 + PP_4118 0.13 -0.4
4,655,194 + PP_4118 0.13 -1.5
4,655,194 + PP_4118 0.13 +0.2
4,655,194 + PP_4118 0.13 -2.1
4,655,194 + PP_4118 0.13 -0.6
4,655,194 + PP_4118 0.13 -1.0
4,655,194 + PP_4118 0.13 +0.1
4,655,194 + PP_4118 0.13 -2.2
4,655,194 + PP_4118 0.13 -0.6
4,655,194 + PP_4118 0.13 +0.2
4,655,194 + PP_4118 0.13 +0.0
4,655,195 - PP_4118 0.13 -0.3
4,655,195 - PP_4118 0.13 -0.9
4,655,195 - PP_4118 0.13 +0.2
4,655,195 - PP_4118 0.13 -0.4
4,655,195 - PP_4118 0.13 -0.3
4,655,195 - PP_4118 0.13 +0.1
4,655,195 - PP_4118 0.13 -0.3
4,655,195 - PP_4118 0.13 +1.0
4,655,195 - PP_4118 0.13 -0.6
4,655,195 - PP_4118 0.13 -0.3
4,655,195 - PP_4118 0.13 +1.3
4,655,195 - PP_4118 0.13 -2.2
4,655,195 - PP_4118 0.13 +0.3
4,655,196 + PP_4118 0.13 +1.3
4,655,196 + PP_4118 0.13 -0.8
4,655,196 + PP_4118 0.13 +3.1
4,655,196 + PP_4118 0.13 -1.1
4,655,196 + PP_4118 0.13 +0.2
4,655,196 + PP_4118 0.13 +1.0
4,655,196 + PP_4118 0.13 +0.4
4,655,196 + PP_4118 0.13 -0.2
4,655,196 + PP_4118 0.13 -0.5
4,655,196 + PP_4118 0.13 -0.5
4,655,196 + PP_4118 0.13 -0.4
4,655,196 + PP_4118 0.13 -0.2
4,655,196 + PP_4118 0.13 +0.8
4,655,196 + PP_4118 0.13 +0.7
4,655,196 + PP_4118 0.13 +0.4
4,655,196 + PP_4118 0.13 -0.3
4,655,196 + PP_4118 0.13 -0.9
4,655,196 + PP_4118 0.13 +0.4
4,655,197 - PP_4118 0.13 -0.9
4,655,197 - PP_4118 0.13 -0.3
4,655,197 - PP_4118 0.13 +0.9
4,655,197 - PP_4118 0.13 -1.8
4,655,197 - PP_4118 0.13 -0.3
4,655,197 - PP_4118 0.13 +0.5
4,655,197 - PP_4118 0.13 +0.5
4,655,197 - PP_4118 0.13 -0.3
4,655,197 - PP_4118 0.13 -1.4
4,655,197 - PP_4118 0.13 -0.3
4,655,197 - PP_4118 0.13 -0.7
4,655,197 - PP_4118 0.13 -1.6
4,655,197 - PP_4118 0.13 -0.1
4,655,197 - PP_4118 0.13 -1.2
4,655,296 - PP_4118 0.27 +0.9
4,655,412 + PP_4118 0.44 -0.0
4,655,412 + PP_4118 0.44 +0.7
4,655,413 - PP_4118 0.44 +0.8
4,655,413 - PP_4118 0.44 -0.2
4,655,413 - PP_4118 0.44 -1.9
4,655,413 - PP_4118 0.44 +0.9
4,655,413 - PP_4118 0.44 -0.9
4,655,425 - PP_4118 0.46 +0.1
4,655,436 - PP_4118 0.47 +1.3
4,655,501 - PP_4118 0.57 +0.1
4,655,685 + PP_4118 0.83 +0.1
4,655,686 - PP_4118 0.83 -0.5
4,655,762 - -0.5
4,655,828 - -1.1

Or see this region's nucleotide sequence