Strain Fitness in Pseudomonas putida KT2440 around PP_4104

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
4,638,155	+		PP_4103	0.54	-0.0
4,638,276	+		PP_4103	0.61	+1.2
4,638,276	+		PP_4103	0.61	-0.6
4,638,276	+		PP_4103	0.61	-1.5
4,638,276	+		PP_4103	0.61	+2.5
4,638,276	+		PP_4103	0.61	+0.1
4,638,276	+		PP_4103	0.61	-0.3
4,638,277	-		PP_4103	0.61	+0.8
4,638,277	-		PP_4103	0.61	+1.3
4,638,372	-		PP_4103	0.67	+0.8
4,638,428	+		PP_4103	0.71	-2.3
4,638,428	+		PP_4103	0.71	+0.2
4,638,428	+		PP_4103	0.71	+0.3
4,638,428	+		PP_4103	0.71	-0.4
4,638,428	+		PP_4103	0.71	-0.9
4,638,428	+		PP_4103	0.71	+0.3
4,638,428	+		PP_4103	0.71	-1.2
4,638,428	+		PP_4103	0.71	-0.2
4,638,429	-		PP_4103	0.71	-1.0
4,638,429	-		PP_4103	0.71	-0.5
4,638,429	-		PP_4103	0.71	+0.1
4,638,429	-		PP_4103	0.71	-1.3
4,638,429	-		PP_4103	0.71	-1.3
4,638,429	-		PP_4103	0.71	-0.2
4,638,429	-		PP_4103	0.71	-1.2
4,638,429	-		PP_4103	0.71	+0.9
4,638,429	-		PP_4103	0.71	+0.1
4,638,429	-		PP_4103	0.71	+0.2
4,638,542	+		PP_4103	0.78	-1.7
4,638,542	+		PP_4103	0.78	+0.6
4,638,543	-		PP_4103	0.78	-0.4
4,638,544	+		PP_4103	0.78	+0.4
4,638,544	+		PP_4103	0.78	+0.3
4,638,545	-		PP_4103	0.78	-0.2
4,638,571	-		PP_4103	0.80	-1.4
4,638,614	-		PP_4103	0.82	+0.1
4,638,614	-		PP_4103	0.82	-0.1
4,638,614	-		PP_4103	0.82	-0.3
4,638,614	-		PP_4103	0.82	-0.8
4,638,618	+		PP_4103	0.82	-0.1
4,638,619	-		PP_4103	0.82	-0.3
4,638,619	-		PP_4103	0.82	-2.4
4,638,619	-		PP_4103	0.82	+0.0
4,638,659	+		PP_4103	0.85	+0.8
4,638,659	+		PP_4103	0.85	+1.6
4,638,659	+		PP_4103	0.85	-0.6
4,638,660	-		PP_4103	0.85	+0.6
4,638,715	+		PP_4103	0.88	+0.6
4,638,715	+		PP_4103	0.88	-0.4
4,638,715	+		PP_4103	0.88	-0.3
4,638,715	+		PP_4103	0.88	-0.6
4,638,875	+				+0.4
4,638,922	-				+0.4
4,639,070	+				-3.1
4,639,071	-				+0.2
4,639,191	+		PP_4104	0.16	-0.3
4,639,192	-		PP_4104	0.16	+0.5
4,639,192	-		PP_4104	0.16	+0.6
4,639,245	+		PP_4104	0.23	-1.2
4,639,245	+		PP_4104	0.23	+0.1
4,639,246	-		PP_4104	0.24	-0.5
4,639,246	-		PP_4104	0.24	+0.9
4,639,320	+		PP_4104	0.34	+0.9
4,639,320	+		PP_4104	0.34	+0.0
4,639,348	-		PP_4104	0.38	-0.0
4,639,348	-		PP_4104	0.38	-0.2
4,639,491	+		PP_4104	0.59	-0.7
4,639,707	+		PP_4104	0.90	+0.9
4,639,812	+				+0.3
4,639,812	+				-0.5
4,639,943	+		PP_4105	0.16	-0.0
4,639,943	+		PP_4105	0.16	+0.5
4,639,943	+		PP_4105	0.16	+0.3
4,639,944	-		PP_4105	0.16	-0.0
4,639,944	-		PP_4105	0.16	-0.2
4,639,944	-		PP_4105	0.16	-0.3
4,640,038	+		PP_4105	0.35	-1.7
4,640,117	-		PP_4105	0.51	+0.2
4,640,128	-				+0.2
4,640,184	+		PP_4105	0.64	-0.1
4,640,185	-		PP_4105	0.64	+0.4
4,640,307	+		PP_4105	0.89	-1.4
4,640,307	+		PP_4105	0.89	-0.4
4,640,307	+		PP_4105	0.89	+1.4
4,640,307	+		PP_4105	0.89	+0.1
4,640,308	-		PP_4105	0.89	-0.6
4,640,308	-		PP_4105	0.89	+1.9
4,640,308	-		PP_4105	0.89	+0.3
4,640,315	-				+0.5
4,640,362	+				+0.1
4,640,362	+				+0.3
4,640,362	+				-3.0
4,640,407	+				-0.8
4,640,518	-				+1.5
4,640,538	+				+0.6
4,640,538	+				+0.5
4,640,538	+				+0.5
4,640,538	+				+0.3
4,640,538	+				+0.5
4,640,539	-				-0.8
4,640,539	-				-0.5
4,640,539	-				+0.5
4,640,564	+		PP_4106	0.10	-1.6
4,640,565	-		PP_4106	0.10	+0.2
4,640,673	+		PP_4106	0.18	-0.0
4,640,673	+		PP_4106	0.18	-0.3
4,640,674	-		PP_4106	0.18	+0.2
4,640,739	+		PP_4106	0.23	-0.8
4,640,739	+		PP_4106	0.23	+0.5
4,640,739	+		PP_4106	0.23	-0.1
4,640,739	+		PP_4106	0.23	+0.8
4,640,739	+		PP_4106	0.23	-0.5
4,640,740	-		PP_4106	0.23	-2.0
4,640,740	-		PP_4106	0.23	+0.2
4,640,740	-		PP_4106	0.23	-0.0
4,640,740	-				+0.5
4,640,740	-		PP_4106	0.23	+0.2