Strain Fitness in Pseudomonas putida KT2440 around PP_4034

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
4,543,526	-				-0.1
4,543,662	+		PP_4033	0.10	-0.7
4,543,663	-		PP_4033	0.10	+0.4
4,544,006	-		PP_4033	0.46	-0.7
4,544,006	-		PP_4033	0.46	-0.9
4,544,066	-		PP_4033	0.52	+1.1
4,544,066	-		PP_4033	0.52	+0.4
4,544,115	+		PP_4033	0.57	+0.0
4,544,116	-		PP_4033	0.57	-1.6
4,544,116	-		PP_4033	0.57	+0.9
4,544,116	-		PP_4033	0.57	-0.9
4,544,116	-		PP_4033	0.57	+0.1
4,544,116	-		PP_4033	0.57	+1.9
4,544,146	-		PP_4033	0.60	+0.5
4,544,146	-		PP_4033	0.60	-0.3
4,544,146	-		PP_4033	0.60	-0.9
4,544,239	+		PP_4033	0.70	-0.5
4,544,239	+		PP_4033	0.70	-0.2
4,544,240	-		PP_4033	0.70	+0.6
4,544,359	+		PP_4033	0.83	-0.3
4,544,360	-		PP_4033	0.83	+0.0
4,544,445	+				+0.5
4,544,446	-				-1.4
4,544,485	-				-1.0
4,544,793	+		PP_4034	0.21	+1.0
4,545,041	+		PP_4034	0.40	+1.6
4,545,222	+		PP_4034	0.55	+0.1
4,545,223	-		PP_4034	0.55	+2.1
4,545,223	-		PP_4034	0.55	+0.9
4,545,354	-		PP_4034	0.65	+1.0
4,545,529	+		PP_4034	0.78	-0.2
4,545,587	+		PP_4034	0.83	+0.4
4,545,587	+		PP_4034	0.83	-0.5
4,545,587	+		PP_4034	0.83	-0.7
4,545,588	-		PP_4034	0.83	-0.7
4,545,828	-				+2.0
4,545,837	-				+0.5
4,545,916	+				+0.3
4,545,916	+				-0.2
4,545,916	+				-0.0
4,545,917	-				-0.3
4,545,955	+				-0.4
4,545,955	+				-0.6
4,545,955	+				+0.4
4,545,955	+				+0.4
4,545,955	+				-1.2
4,545,956	-				+0.1
4,545,962	-				+0.5
4,545,997	-				+0.2
4,545,997	-				+0.6
4,546,070	-		PP_4035	0.14	-0.5
4,546,111	+		PP_4035	0.17	-0.3
4,546,111	+		PP_4035	0.17	+0.1
4,546,112	-		PP_4035	0.17	-0.4
4,546,112	-		PP_4035	0.17	-2.0
4,546,157	-		PP_4035	0.20	+0.7
4,546,257	-		PP_4035	0.27	-0.3
4,546,643	-		PP_4035	0.53	+1.0
4,546,643	-		PP_4035	0.53	+0.1
4,546,643	-		PP_4035	0.53	+1.0