Strain Fitness in Pseudomonas putida KT2440 around PP_3742

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
4,270,830	+		PP_3741	0.51	+0.2
4,270,830	+		PP_3741	0.51	+0.9
4,270,830	+		PP_3741	0.51	-0.6
4,270,924	-		PP_3741	0.56	+0.7
4,270,926	+		PP_3741	0.56	+0.1
4,270,927	-		PP_3741	0.56	-1.1
4,270,941	+		PP_3741	0.57	+2.8
4,270,953	+		PP_3741	0.58	-0.5
4,270,953	+		PP_3741	0.58	+0.3
4,270,953	+		PP_3741	0.58	-1.8
4,270,954	-		PP_3741	0.58	+0.7
4,270,995	+		PP_3741	0.60	+0.1
4,270,995	+		PP_3741	0.60	-1.6
4,270,995	+		PP_3741	0.60	+0.5
4,270,995	+		PP_3741	0.60	+1.4
4,270,995	+				+0.7
4,270,995	+		PP_3741	0.60	-0.2
4,270,995	+		PP_3741	0.60	+0.2
4,270,996	-		PP_3741	0.60	-2.1
4,270,996	-		PP_3741	0.60	-0.3
4,270,996	-		PP_3741	0.60	+1.8
4,271,025	+		PP_3741	0.61	-0.3
4,271,026	-		PP_3741	0.61	-1.8
4,271,026	-		PP_3741	0.61	-0.4
4,271,032	-		PP_3741	0.62	-1.8
4,271,073	+		PP_3741	0.64	+0.3
4,271,073	+		PP_3741	0.64	-1.7
4,271,223	+		PP_3741	0.72	+0.8
4,271,223	+		PP_3741	0.72	-1.3
4,271,224	-		PP_3741	0.72	-1.2
4,271,224	-		PP_3741	0.72	+0.5
4,271,224	-		PP_3741	0.72	-1.0
4,271,224	-		PP_3741	0.72	-0.3
4,271,225	+		PP_3741	0.72	-0.6
4,271,325	-		PP_3741	0.77	+0.9
4,271,520	+		PP_3741	0.88	+1.9
4,271,520	+		PP_3741	0.88	-0.3
4,271,520	+		PP_3741	0.88	+0.0
4,271,521	-		PP_3741	0.88	+0.4
4,271,612	-				-0.5
4,271,679	+				-0.6
4,271,679	+				-0.2
4,271,679	+				-1.0
4,271,679	+				+0.5
4,271,679	+				-0.1
4,271,680	-				-0.4
4,271,680	-				+0.4
4,271,827	+				-1.0
4,271,828	-				+0.3
4,271,930	-		PP_3742	0.21	-1.4
4,272,009	-		PP_3742	0.33	-0.4
4,272,009	-		PP_3742	0.33	+1.2
4,272,014	-		PP_3742	0.34	+0.8
4,272,100	+		PP_3742	0.48	-0.0
4,272,101	-		PP_3742	0.48	-1.4
4,272,103	+		PP_3742	0.48	-0.2
4,272,103	+		PP_3742	0.48	-1.1
4,272,104	-		PP_3742	0.49	-0.7
4,272,104	-		PP_3742	0.49	-0.3
4,272,104	-		PP_3742	0.49	+0.1
4,272,104	-		PP_3742	0.49	-0.8
4,272,116	+		PP_3742	0.51	+0.4
4,272,116	+		PP_3742	0.51	+0.5
4,272,380	-				+0.1
4,272,380	-				-0.7
4,272,380	-				+0.9
4,272,633	+				+0.3
4,272,633	+				+0.1
4,272,655	+				-0.5
4,272,656	-				-0.8
4,272,672	-				+0.4
4,272,672	-				+0.2
4,272,692	-				-0.8
4,272,717	+				+0.1
4,272,718	-				-0.7
4,272,718	-				-0.4
4,272,806	-		PP_3743	0.31	-0.6
4,272,822	-		PP_3743	0.36	-0.8
4,272,911	+		PP_3743	0.64	+0.9
4,272,911	+		PP_3743	0.64	-0.7
4,272,911	+		PP_3743	0.64	+0.0
4,272,912	-		PP_3743	0.64	-1.1
4,272,912	-		PP_3743	0.64	-0.5
4,272,912	-		PP_3743	0.64	-0.1
4,272,912	-		PP_3743	0.64	+0.6
4,273,073	+				-0.2
4,273,074	-				-0.8
4,273,102	+				-0.1
4,273,103	-				-0.2
4,273,163	+				+0.1
4,273,163	+				+0.9
4,273,174	+		PP_3744	0.11	+0.1
4,273,174	+		PP_3744	0.11	-0.1
4,273,174	+		PP_3744	0.11	+1.3
4,273,175	-		PP_3744	0.11	+0.3
4,273,175	-		PP_3744	0.11	-0.4
4,273,175	-		PP_3744	0.11	-0.9
4,273,282	-		PP_3744	0.25	-0.7
4,273,343	-		PP_3744	0.33	+1.3
4,273,361	-		PP_3744	0.35	-0.1
4,273,361	-		PP_3744	0.35	-0.2