Strain Fitness in Pseudomonas putida KT2440 around PP_3726

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
4,250,364	-		PP_3725	0.28	+0.2
4,250,567	+		PP_3725	0.45	-0.1
4,250,567	+		PP_3725	0.45	+1.9
4,250,567	+		PP_3725	0.45	+0.4
4,250,576	+		PP_3725	0.46	-2.9
4,250,577	-				+0.1
4,250,684	+		PP_3725	0.55	-0.4
4,250,684	+		PP_3725	0.55	-0.9
4,250,684	+		PP_3725	0.55	+0.1
4,250,685	-		PP_3725	0.55	+0.1
4,250,685	-		PP_3725	0.55	-1.6
4,250,685	-		PP_3725	0.55	-0.3
4,250,685	-		PP_3725	0.55	-0.8
4,250,685	-				+1.4
4,250,879	+		PP_3725	0.72	+0.6
4,250,879	+		PP_3725	0.72	+0.2
4,250,996	+		PP_3725	0.82	-0.1
4,250,996	+		PP_3725	0.82	-0.2
4,250,997	-		PP_3725	0.82	+0.3
4,251,041	+		PP_3725	0.86	+0.8
4,251,041	+		PP_3725	0.86	-0.4
4,251,041	+		PP_3725	0.86	-0.3
4,251,041	+		PP_3725	0.86	-0.5
4,251,042	-		PP_3725	0.86	+1.6
4,251,239	+				+0.7
4,251,379	+		PP_3726	0.18	-2.5
4,251,783	-		PP_3726	0.69	-1.9
4,252,119	+				-1.3
4,252,119	+				+0.7
4,252,120	-				-0.1
4,252,150	-				+0.6
4,252,150	-				+0.5
4,252,178	-				+0.8
4,252,178	-				-0.0
4,252,203	+				-0.3
4,252,330	+				-0.2
4,252,339	+				-1.0
4,252,340	-				-0.0
4,252,369	+				-0.7
4,252,456	+		PP_3727	0.13	+0.0
4,252,471	+		PP_3727	0.14	+1.0
4,252,471	+		PP_3727	0.14	+0.1
4,252,471	+		PP_3727	0.14	-0.4
4,252,742	+		PP_3727	0.33	-2.0
4,252,743	-		PP_3727	0.33	+0.7
4,252,756	+		PP_3727	0.34	-0.7
4,252,756	+		PP_3727	0.34	+0.4
4,252,756	+		PP_3727	0.34	+0.9
4,252,756	+		PP_3727	0.34	+0.9
4,252,756	+		PP_3727	0.34	-0.9
4,252,757	-		PP_3727	0.34	+0.5
4,252,757	-		PP_3727	0.34	+0.0
4,252,757	-		PP_3727	0.34	-0.4
4,252,924	+		PP_3727	0.46	-0.6
4,252,924	+		PP_3727	0.46	+0.9
4,252,924	+		PP_3727	0.46	+0.6
4,252,924	+		PP_3727	0.46	+0.2
4,252,924	+		PP_3727	0.46	-2.7
4,252,925	-		PP_3727	0.46	-0.1
4,252,925	-		PP_3727	0.46	-0.4
4,252,925	-		PP_3727	0.46	-2.0