Strain Fitness in Pseudomonas putida KT2440 around PP_3340

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
3,775,971	-				+0.8
3,776,113	+		PP_3338	0.43	-0.8
3,776,113	+		PP_3338	0.43	-0.8
3,776,114	-		PP_3338	0.44	-0.2
3,776,114	-		PP_3338	0.44	-0.6
3,776,114	-		PP_3338	0.44	-0.3
3,776,182	-		PP_3338	0.62	-0.4
3,776,281	+		PP_3338	0.90	-0.2
3,776,408	+				+0.6
3,776,431	+				-0.7
3,776,432	-				-0.3
3,776,443	+				-0.8
3,776,747	-		PP_3339	0.70	-0.2
3,776,747	-		PP_3339	0.70	-0.9
3,776,749	+		PP_3339	0.71	-0.9
3,776,750	-		PP_3339	0.71	+0.1
3,777,088	-				-0.1
3,777,472	+		PP_3340	0.26	-1.0
3,777,473	-		PP_3340	0.26	-0.2
3,777,473	-		PP_3340	0.26	-1.2
3,777,562	+		PP_3340	0.30	-1.3
3,777,563	-		PP_3340	0.30	+0.8
3,777,643	+		PP_3340	0.34	-0.2
3,777,643	+		PP_3340	0.34	-1.6
3,777,644	-		PP_3340	0.34	-0.9
3,777,644	-		PP_3340	0.34	-0.3
3,777,644	-		PP_3340	0.34	-0.2
3,777,644	-		PP_3340	0.34	+0.4
3,777,644	-		PP_3340	0.34	-0.7
3,777,664	+		PP_3340	0.35	-0.0
3,777,691	+		PP_3340	0.36	+0.1
3,777,692	-		PP_3340	0.36	-0.9
3,777,862	+		PP_3340	0.45	+0.1
3,777,863	-		PP_3340	0.45	-0.9
3,777,874	+		PP_3340	0.45	-1.2
3,777,875	-		PP_3340	0.45	-0.6
3,777,875	-		PP_3340	0.45	+0.1
3,777,875	-		PP_3340	0.45	+0.1
3,777,875	-		PP_3340	0.45	+0.2
3,777,899	-		PP_3340	0.46	-1.0
3,777,934	+		PP_3340	0.48	-0.8
3,777,934	+		PP_3340	0.48	-0.6
3,777,934	+		PP_3340	0.48	-1.1
3,777,935	-		PP_3340	0.48	+1.1
3,777,935	-		PP_3340	0.48	+1.1
3,777,946	+		PP_3340	0.49	-0.5
3,777,946	+		PP_3340	0.49	-0.7
3,777,946	+		PP_3340	0.49	-0.2
3,778,024	-		PP_3340	0.52	-2.1
3,778,074	-		PP_3340	0.55	-0.6
3,778,125	+		PP_3340	0.57	-0.4
3,778,130	+		PP_3340	0.58	+0.1
3,778,130	+		PP_3340	0.58	+0.2
3,778,130	+		PP_3340	0.58	+0.2
3,778,131	-		PP_3340	0.58	+0.4
3,778,131	-		PP_3340	0.58	-0.0
3,778,131	-		PP_3340	0.58	-0.1
3,778,131	-		PP_3340	0.58	-0.7
3,778,131	-		PP_3340	0.58	+0.4
3,778,131	-		PP_3340	0.58	-1.0
3,778,231	+		PP_3340	0.63	-1.1
3,778,231	+		PP_3340	0.63	-0.4
3,778,232	-		PP_3340	0.63	-0.4
3,778,310	-		PP_3340	0.66	-0.1
3,778,310	-		PP_3340	0.66	-0.1
3,778,357	+		PP_3340	0.69	+1.1
3,778,357	+		PP_3340	0.69	-0.5
3,778,358	-				+2.0
3,778,462	+		PP_3340	0.74	-2.8
3,778,555	+		PP_3340	0.78	-0.8
3,778,609	+		PP_3340	0.81	-0.3
3,778,718	-		PP_3340	0.86	-0.3
3,778,771	+		PP_3340	0.89	+0.9
3,778,771	+		PP_3340	0.89	-0.9
3,778,771	+		PP_3340	0.89	+0.2
3,778,771	+		PP_3340	0.89	-0.3
3,778,771	+		PP_3340	0.89	+0.2
3,778,772	-		PP_3340	0.89	+0.6
3,778,774	+		PP_3340	0.89	-0.0
3,778,775	-		PP_3340	0.89	-1.0
3,778,800	+				-0.7
3,778,800	+				-0.1
3,778,800	+				-2.6
3,778,800	+				-0.8
3,778,801	-				+0.8
3,778,801	-				+0.5
3,778,801	-				+1.5
3,778,805	-				+0.2
3,778,817	+				+0.4
3,778,817	+				+0.9
3,778,818	-				+0.2
3,778,818	-				-0.4
3,778,818	-				-1.5
3,778,840	+				-0.3
3,778,840	+				+0.4
3,778,841	-				-0.2
3,778,841	-				-0.1
3,778,841	-				-2.4
3,778,897	+				-0.4
3,778,900	+				-0.9
3,778,900	+				-0.4
3,778,900	+				-0.0
3,778,901	-				+0.2
3,778,972	+				+0.0
3,778,972	+				-1.2
3,778,973	-				+0.2
3,778,973	-				+0.1
3,779,290	+		PP_3341	0.59	-0.8
3,779,290	+		PP_3341	0.59	+0.7
3,779,290	+		PP_3341	0.59	+1.1
3,779,290	+		PP_3341	0.59	-0.4
3,779,291	-		PP_3341	0.59	-0.2
3,779,291	-		PP_3341	0.59	-0.3
3,779,516	-				+1.8
3,779,516	-				-0.1
3,779,516	-				+1.1
3,779,520	+				+0.1
3,779,662	-				+1.4
3,779,662	-				+0.9
3,779,662	-				-0.4
3,779,704	-				-0.4
3,779,721	+		PP_3342	0.11	+0.6
3,779,722	-		PP_3342	0.11	-0.2
3,779,722	-		PP_3342	0.11	+0.2
3,779,739	+		PP_3342	0.12	-1.1
3,779,739	+		PP_3342	0.12	-0.1
3,779,739	+		PP_3342	0.12	-0.7
3,779,739	+		PP_3342	0.12	-0.5
3,779,740	-		PP_3342	0.12	+0.4
3,779,740	-		PP_3342	0.12	-1.2
3,779,740	-		PP_3342	0.12	+0.2
3,779,757	+		PP_3342	0.13	+0.2
3,779,758	-		PP_3342	0.13	+1.2
3,779,760	-		PP_3342	0.13	+0.9
3,779,827	-		PP_3342	0.18	+1.4