Strain Fitness in Pseudomonas putida KT2440 around PP_3195

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
3,623,305	-		PP_3194	0.44	-0.1
3,623,409	+		PP_3194	0.52	-0.4
3,623,578	-		PP_3194	0.65	+0.2
3,624,089	-				-0.6
3,624,122	+				+0.6
3,624,123	-				+0.5
3,624,123	-				+0.8
3,624,271	+				+0.4
3,624,271	+				+0.2
3,624,272	-				-2.3
3,624,272	-				-0.6
3,624,442	-		PP_3195	0.17	+0.3
3,624,474	+		PP_3195	0.20	-1.0
3,624,670	+		PP_3195	0.35	-0.6
3,624,747	+		PP_3195	0.41	-0.4
3,625,066	+		PP_3195	0.67	+0.7
3,625,121	-		PP_3195	0.71	+0.6
3,625,121	-		PP_3195	0.71	+2.0
3,625,121	-		PP_3195	0.71	-0.7
3,625,123	+		PP_3195	0.71	-1.2
3,625,123	+		PP_3195	0.71	+1.1
3,625,123	+		PP_3195	0.71	-0.5
3,625,124	-		PP_3195	0.71	+0.0
3,625,124	-		PP_3195	0.71	+0.0
3,625,124	-		PP_3195	0.71	+0.1
3,625,124	-		PP_3195	0.71	+1.1
3,625,124	-		PP_3195	0.71	+0.2
3,625,124	-		PP_3195	0.71	-0.7
3,625,124	-		PP_3195	0.71	+1.5
3,625,124	-		PP_3195	0.71	-0.6
3,625,224	+		PP_3195	0.79	-1.1
3,625,224	+		PP_3195	0.79	+1.0
3,625,357	+		PP_3195	0.90	+0.7
3,625,357	+		PP_3195	0.90	-0.2
3,625,357	+		PP_3195	0.90	+0.1
3,625,358	-		PP_3195	0.90	+1.1
3,625,372	+				-1.3
3,625,462	-				-0.5
3,625,462	-				+0.7
3,625,692	+		PP_3196	0.14	-1.0
3,625,746	-		PP_3196	0.19	-0.6
3,625,746	-		PP_3196	0.19	+1.5
3,625,746	-		PP_3196	0.19	+0.2
3,625,746	-		PP_3196	0.19	-0.2
3,625,783	+		PP_3196	0.23	+0.2
3,625,856	+		PP_3196	0.31	-0.8
3,625,910	-		PP_3196	0.37	+0.2
3,625,934	+		PP_3196	0.39	-0.3
3,625,934	+		PP_3196	0.39	+1.1
3,625,934	+		PP_3196	0.39	+0.8
3,625,934	+		PP_3196	0.39	+0.4
3,625,935	-		PP_3196	0.40	-0.1
3,626,039	+		PP_3196	0.51	-0.5
3,626,039	+		PP_3196	0.51	-0.2
3,626,040	-		PP_3196	0.51	-0.1
3,626,124	+		PP_3196	0.60	-0.6
3,626,125	-		PP_3196	0.60	+0.8
3,626,170	+		PP_3196	0.65	+0.9
3,626,186	+		PP_3196	0.66	+0.7
3,626,394	+		PP_3196	0.88	+0.0