Strain Fitness in Pseudomonas putida KT2440 around PP_2933

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
3,334,771	-		PP_2932	0.54	+1.2
3,334,846	-		PP_2932	0.58	-0.7
3,335,116	+		PP_2932	0.74	+1.5
3,335,302	+		PP_2932	0.85	-0.9
3,335,303	-		PP_2932	0.85	-0.9
3,335,303	-		PP_2932	0.85	-0.7
3,335,452	+				-0.4
3,335,453	-				-1.4
3,335,550	+				-0.4
3,335,606	+				+0.2
3,335,606	+				-0.8
3,335,607	-				-0.2
3,335,607	-				-0.2
3,335,607	-				-0.8
3,335,654	+				-0.3
3,335,655	-				+0.3
3,335,655	-				+0.6
3,335,689	-				-0.4
3,335,689	-				-1.3
3,335,689	-				-0.6
3,335,776	+				+0.1
3,335,815	+				-0.2
3,335,880	-		PP_2933	0.15	+0.5
3,335,949	+		PP_2933	0.23	-0.2
3,335,977	+		PP_2933	0.27	+0.1
3,335,978	-		PP_2933	0.27	+0.3
3,335,978	-		PP_2933	0.27	-0.6
3,335,982	+		PP_2933	0.27	-0.2
3,335,982	+		PP_2933	0.27	-1.1
3,335,982	+		PP_2933	0.27	-0.9
3,336,029	+		PP_2933	0.33	+0.1
3,336,030	-		PP_2933	0.33	-0.8
3,336,030	-		PP_2933	0.33	-0.1
3,336,096	+		PP_2933	0.41	+0.3
3,336,096	+				+0.9
3,336,097	-		PP_2933	0.41	-1.2
3,336,097	-		PP_2933	0.41	+0.4
3,336,097	-		PP_2933	0.41	-0.3
3,336,102	+		PP_2933	0.41	-0.2
3,336,102	+		PP_2933	0.41	-1.4
3,336,103	-		PP_2933	0.42	+0.3
3,336,103	-		PP_2933	0.42	-1.1
3,336,129	+		PP_2933	0.45	+0.1
3,336,372	+		PP_2933	0.73	+1.0
3,336,453	+		PP_2933	0.83	-1.2
3,336,454	-		PP_2933	0.83	+0.5
3,336,454	-		PP_2933	0.83	+0.5
3,336,579	+				+1.4
3,336,580	-				+0.1
3,336,580	-				+0.8
3,336,652	+				+0.2
3,336,652	+				-1.5
3,336,652	+				+0.0
3,336,653	-				-0.1
3,336,653	-				-0.5
3,336,756	-				+0.0
3,336,889	+				+0.9
3,336,889	+				+0.4
3,336,890	-				-0.7
3,336,890	-				-1.1
3,336,890	-				-0.1
3,336,973	+		PP_2934	0.17	-1.0
3,336,973	+		PP_2934	0.17	+0.3
3,336,973	+		PP_2934	0.17	+0.7
3,336,973	+		PP_2934	0.17	-0.4
3,336,974	-		PP_2934	0.17	-0.6
3,336,975	+		PP_2934	0.17	-1.1
3,336,976	-		PP_2934	0.17	-0.7
3,337,041	+		PP_2934	0.23	+1.1
3,337,083	-		PP_2934	0.27	-0.5
3,337,083	-		PP_2934	0.27	-0.5
3,337,187	+		PP_2934	0.37	+0.1
3,337,356	-		PP_2934	0.53	-0.3
3,337,356	-		PP_2934	0.53	-1.3
3,337,404	+		PP_2934	0.58	-0.5
3,337,404	+		PP_2934	0.58	-1.1
3,337,404	+		PP_2934	0.58	-0.5
3,337,535	+		PP_2934	0.70	+0.7
3,337,535	+		PP_2934	0.70	-1.2
3,337,536	-		PP_2934	0.71	-0.6
3,337,536	-		PP_2934	0.71	+0.6
3,337,566	+		PP_2934	0.73	+0.6
3,337,574	-		PP_2934	0.74	+0.2