Strain Fitness in Pseudomonas putida KT2440 around PP_2600

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
2,971,171	+		PP_2599	0.63	+0.2
2,971,171	+		PP_2599	0.63	-0.2
2,971,421	+		PP_2599	0.74	+1.3
2,971,422	-		PP_2599	0.74	-0.1
2,971,512	+		PP_2599	0.77	-0.7
2,971,513	-		PP_2599	0.77	-0.6
2,971,558	+		PP_2599	0.79	-0.7
2,971,558	+		PP_2599	0.79	-0.8
2,971,559	-		PP_2599	0.79	+0.4
2,971,570	+		PP_2599	0.80	-1.0
2,971,834	+				+0.0
2,971,834	+				-0.2
2,971,835	-				+0.1
2,971,835	-				-0.7
2,971,835	-				+0.8
2,971,916	+				+0.7
2,971,916	+				+0.4
2,971,917	-				-2.1
2,971,917	-				+1.0
2,971,940	+				+0.3
2,971,941	-				-0.0
2,971,951	+				+0.0
2,972,168	+				+1.3
2,972,168	+				-0.7
2,972,169	-				+0.5
2,972,204	+				-1.2
2,972,291	+				+1.0
2,972,292	-				+1.1
2,972,292	-				+0.6
2,972,327	-				+0.8
2,972,396	+		PP_2600	0.14	+0.5
2,972,396	+		PP_2600	0.14	-0.2
2,972,397	-		PP_2600	0.14	-0.3
2,972,433	+		PP_2600	0.16	+0.8
2,972,524	-		PP_2600	0.21	-0.6
2,972,613	-		PP_2600	0.26	-0.6
2,972,756	+		PP_2600	0.35	-0.8
2,972,756	+		PP_2600	0.35	+0.4
2,972,757	-		PP_2600	0.35	-0.7
2,972,762	+		PP_2600	0.35	+1.4
2,972,762	+		PP_2600	0.35	+0.5
2,972,765	+		PP_2600	0.35	+0.1
2,972,766	-		PP_2600	0.35	-0.4
2,972,766	-		PP_2600	0.35	-0.7
2,972,839	-		PP_2600	0.40	-0.3
2,973,278	+		PP_2600	0.65	+1.1
2,973,279	-		PP_2600	0.65	+1.3
2,973,496	-		PP_2600	0.78	+1.1
2,973,548	+		PP_2600	0.81	+0.1
2,973,548	+		PP_2600	0.81	-1.3
2,973,548	+		PP_2600	0.81	+0.4
2,973,549	-		PP_2600	0.81	+0.3
2,973,570	+		PP_2600	0.82	+0.1
2,973,570	+		PP_2600	0.82	-2.2
2,973,614	+		PP_2600	0.85	+0.6
2,973,614	+		PP_2600	0.85	+0.7
2,973,614	+		PP_2600	0.85	+1.2
2,973,615	-		PP_2600	0.85	-1.2
2,973,615	-		PP_2600	0.85	+0.2
2,973,615	-		PP_2600	0.85	+0.1
2,973,615	-		PP_2600	0.85	+0.6
2,973,829	+				+0.2
2,973,829	+				-2.5
2,973,829	+				-0.2
2,973,830	-				+0.8
2,973,830	-				-0.0
2,974,105	+				+1.3
2,974,106	-				+0.9
2,974,106	-				+0.3
2,974,141	+				+1.4
2,974,141	+				+0.8
2,974,218	+		PP_2601	0.19	+0.2
2,974,218	+		PP_2601	0.19	-1.1
2,974,218	+		PP_2601	0.19	+0.8
2,974,219	-		PP_2601	0.19	-0.3
2,974,248	+		PP_2601	0.23	+0.4
2,974,270	+		PP_2601	0.26	-1.0
2,974,288	-		PP_2601	0.28	+1.1
2,974,470	+		PP_2601	0.52	+0.2
2,974,470	+		PP_2601	0.52	-0.5
2,974,470	+		PP_2601	0.52	+1.0
2,974,471	-		PP_2601	0.52	-1.1
2,974,471	-		PP_2601	0.52	+0.1
2,974,471	-		PP_2601	0.52	+0.1
2,974,544	+		PP_2601	0.61	-0.9
2,974,605	+		PP_2601	0.69	+0.0
2,974,605	+		PP_2601	0.69	+0.0
2,974,783	+				+0.3